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Report for CCDS6330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6330.1 Public Homo sapiens 8 DSCC1 24 110 108 CCDS HistoryNCBI Gene:79075Re-query CCDS DB by CCDS ID:6330.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6330.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313655.5 ENSP00000322180.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313655.5Link to Ensembl Protein Viewer:ENSP00000322180.4Re-query CCDS DB by Nucleotide ID:ENST00000313655Re-query CCDS DB by Protein ID:ENSP00000322180
Original member Current member NCBI NM_024094.3 NP_076999.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024094.3Link to Protein Sequence:NP_076999.2Re-query CCDS DB by Nucleotide ID:NM_024094Re-query CCDS DB by Protein ID:NP_076999Link to BLAST:NP_076999.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076999.2 393 Q9BVC3 393 100% 0 0

Chromosomal Locations for CCDS 6330.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 119834893 119835001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119838259 119838407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119841794 119841948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119842776 119842828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119843609 119843747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119846990 119847080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119850382 119850516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119853047 119853215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119855614 119855795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGAAGAGGACCCGCGACGAGGTGGATGCGACGCTGCAGATCGCCAAGCTGAATGCGGCCGAGCTGCTGC
CGGCGGTGCACTGCCTGGGCTTCGGCCCTGGGGCCAGCGGCGCTGCAGCCGGCGACTTCTGCCTGCTGGA
GCTGGAGCCCACGCTGTGCCAGCAGCTGGAGGATGGACACAGTCTTGTGATTCGTGGTGATAAAGACGAG
CAAGCTGTGCTGTGCAGTAAAGACAAAACATACGACTTGAAGATAGCAGACACTTCCAATATGTTGCTTT
TCATTCCTGGTTGTAAAACTCCGGACCAGTTGAAGAAGGAAGATTCACACTGTAACATTATTCACACTGA
GATCTTTGGTTTTTCTAATAATTATTGGGAATTAAGAAGACGTAGACCCAAGTTAAAGAAGCTAAAGAAA
CTTTTGATGGAAAATCCATATGAAGGACCTGACAGTCAAAAAGAGAAGGATTCAAATAGCTCAAAATATA
CAACTGAAGATTTGCTTGATCAAATTCAGGCAAGTGAGGAAGAAATAATGACCCAATTACAAGTTCTAAA
TGCCTGTAAGATTGGAGGTTATTGGAGGATTCTTGAATTTGATTATGAGATGAAACTTCTGAATCATGTA
ACTCAGCTTGTGGATTCTGAATCATGGTCTTTTGGTAAAGTTCCTTTGAACACATGCCTTCAGGAACTCG
GACCATTGGAGCCAGAGGAAATGATAGAACACTGTCTTAAATGTTATGGGAAGAAATATGTAGATGAAGG
CGAAGTTTATTTTGAGTTGGATGCTGATAAAATATGTAGAGCAGCAGCACGAATGCTACTTCAGAATGCG
GTGAAATTCAATCTCGCTGAGTTTCAAGAAGTGTGGCAGCAGAGTGTTCCTGAAGGAATGGTAACTAGTC
TTGATCAGCTTAAGGGTTTAGCGCTGGTGGATAGACACTCGAGACCAGAAATCATATTTTTGCTGAAAGT
AGATGATTTACCTGAGGATAATCAGGAACGTTTTAATAGCCTTTTCTCTCTAAGGGAGAAGTGGACAGAA
GAAGATATTGCTCCATATATTCAAGATTTGTGTGGAGAGAAGCAAACCATAGGTGCATTACTCACTAAAT
ATTCTCATTCTTCGATGCAAAATGGTGTTAAAGTTTATAATTCGAGAAGACCCATTTCTTAA

Translation (393 aa):
MKRTRDEVDATLQIAKLNAAELLPAVHCLGFGPGASGAAAGDFCLLELEPTLCQQLEDGHSLVIRGDKDE
QAVLCSKDKTYDLKIADTSNMLLFIPGCKTPDQLKKEDSHCNIIHTEIFGFSNNYWELRRRRPKLKKLKK
LLMENPYEGPDSQKEKDSNSSKYTTEDLLDQIQASEEEIMTQLQVLNACKIGGYWRILEFDYEMKLLNHV
TQLVDSESWSFGKVPLNTCLQELGPLEPEEMIEHCLKCYGKKYVDEGEVYFELDADKICRAAARMLLQNA
VKFNLAEFQEVWQQSVPEGMVTSLDQLKGLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTE
EDIAPYIQDLCGEKQTIGALLTKYSHSSMQNGVKVYNSRRPIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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