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Report for CCDS78525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78525.1 Public Homo sapiens X VBP1 24 110 108 CCDS HistoryNCBI Gene:7411Re-query CCDS DB by CCDS ID:78525.1Re-query CCDS DB by GeneID:7411See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78525.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535916.5 ENSP00000438694.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535916.5Link to Ensembl Protein Viewer:ENSP00000438694.1Re-query CCDS DB by Nucleotide ID:ENST00000535916Re-query CCDS DB by Protein ID:ENSP00000438694
Original member Current member EBI ENST00000625964.2 ENSP00000486053.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000625964.2Link to Ensembl Protein Viewer:ENSP00000486053.1Re-query CCDS DB by Nucleotide ID:ENST00000625964Re-query CCDS DB by Protein ID:ENSP00000486053
Original member Current member NCBI NM_001303544.1 NP_001290473.1 Accepted alive Link to Nucleotide Sequence:NM_001303544.1Link to Protein Sequence:NP_001290473.1Re-query CCDS DB by Nucleotide ID:NM_001303544Re-query CCDS DB by Protein ID:NP_001290473Link to BLAST:NP_001290473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290473.1 192 P61758-2 192 100% 0 0

Chromosomal Locations for CCDS 78525.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 155208904 155208981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155220183 155220307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155227235 155227301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155228384 155228482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155236229 155236367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155238772 155238842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGCACCTCAACCCATGATTCATACCCAGCAAGGCCTAAGGACCAGTAGTCCTTCCACTCCATCCCCAG
AGCATCAGGAAGATGTAGATTCCTTCATGAAACAGCCTGGGAATGAGACTGCAGATACAGTATTAAAGAA
GCTGGATGAACAGTACCAGAAGTATAAGTTTATGGAACTCAACCTTGCTCAAAAGAAAAGAAGGCTAAAA
GGTCAGATTCCTGAAATTAAACAGACTTTGGAAATTCTAAAATACATGCAGAAGAAAAAAGAGTCCACCA
ACTCAATGGAGACCAGATTCTTGCTGGCAGATAACCTGTATTGCAAAGCTTCAGTTCCTCCTACCGATAA
AGTGTGTCTGTGGTTGGGGGCTAATGTAATGCTTGAATATGATATTGATGAAGCTCAGGCATTGTTGGAA
AAGAATTTATCGACTGCCACAAAGAATCTTGATTCCCTGGAGGAAGACCTTGACTTTCTTCGAGATCAAT
TTACTACCACAGAAGTCAATATGGCCAGGGTTTATAATTGGGATGTAAAAAGAAGAAACAAGGATGACTC
TACCAAGAACAAAGCATAA

Translation (192 aa):
MAPQPMIHTQQGLRTSSPSTPSPEHQEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLK
GQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLE
KNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRRNKDDSTKNKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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