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Report for CCDS11525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11525.1 Public Homo sapiens 17 CBX1 24 110 108 CCDS HistoryNCBI Gene:10951Re-query CCDS DB by CCDS ID:11525.1Re-query CCDS DB by GeneID:10951See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11525.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225603.9 ENSP00000225603.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225603.9Link to Ensembl Protein Viewer:ENSP00000225603.4Re-query CCDS DB by Nucleotide ID:ENST00000225603Re-query CCDS DB by Protein ID:ENSP00000225603
Original member Current member EBI ENST00000393408.7 ENSP00000377060.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393408.7Link to Ensembl Protein Viewer:ENSP00000377060.3Re-query CCDS DB by Nucleotide ID:ENST00000393408Re-query CCDS DB by Protein ID:ENSP00000377060
Original member Current member NCBI NM_001127228.2 NP_001120700.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001127228.2Link to Protein Sequence:NP_001120700.1Re-query CCDS DB by Nucleotide ID:NM_001127228Re-query CCDS DB by Protein ID:NP_001120700Link to BLAST:NP_001120700.1
Original member Current member NCBI NM_006807.5 NP_006798.1 Accepted alive Link to Nucleotide Sequence:NM_006807.5Link to Protein Sequence:NP_006798.1Re-query CCDS DB by Nucleotide ID:NM_006807Re-query CCDS DB by Protein ID:NP_006798Link to BLAST:NP_006798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120700.1 185 P83916 185 100% 0 0
NP_006798.1 185 P83916 185 100% 0 0

Chromosomal Locations for CCDS 11525.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48071435 48071579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48075006 48075100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48076001 48076178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48076865 48077004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGGGAAAAAACAAAACAAGAAGAAAGTGGAGGAGGTGCTAGAAGAGGAGGAAGAGGAATATGTGGTGG
AAAAAGTTCTCGACCGTCGAGTGGTAAAGGGCAAAGTGGAGTACCTCCTAAAGTGGAAGGGATTCTCAGA
TGAGGACAACACATGGGAGCCAGAAGAGAACCTGGATTGCCCCGACCTCATTGCTGAGTTTCTGCAGTCA
CAGAAAACAGCACATGAGACAGATAAATCAGAGGGAGGCAAGCGCAAAGCTGATTCTGATTCTGAAGATA
AGGGAGAGGAGAGCAAACCAAAGAAGAAGAAAGAAGAGTCAGAAAAGCCACGAGGCTTTGCTCGAGGTTT
GGAGCCGGAGCGGATTATTGGAGCTACAGACTCCAGTGGAGAGCTCATGTTCCTGATGAAATGGAAAAAC
TCTGATGAGGCTGACCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTCATATCCTTCT
ATGAGGAAAGGCTGACGTGGCATTCCTACCCCTCGGAGGATGATGACAAAAAAGATGACAAGAACTAA

Translation (185 aa):
MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS
QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN
SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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