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Report for CCDS34331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34331.1 Public Homo sapiens 6 SLC22A23 24 110 108 CCDS HistoryNCBI Gene:63027Re-query CCDS DB by CCDS ID:34331.1Re-query CCDS DB by GeneID:63027See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34331.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380302.8 ENSP00000369657.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380302.8Link to Ensembl Protein Viewer:ENSP00000369657.4Re-query CCDS DB by Nucleotide ID:ENST00000380302Re-query CCDS DB by Protein ID:ENSP00000369657
Original member Current member EBI ENST00000490273.5 ENSP00000419463.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000490273.5Link to Ensembl Protein Viewer:ENSP00000419463.1Re-query CCDS DB by Nucleotide ID:ENST00000490273Re-query CCDS DB by Protein ID:ENSP00000419463
Original member Current member NCBI NM_001286455.1 NP_001273384.1 Accepted alive Link to Nucleotide Sequence:NM_001286455.1Link to Protein Sequence:NP_001273384.1Re-query CCDS DB by Nucleotide ID:NM_001286455Re-query CCDS DB by Protein ID:NP_001273384Link to BLAST:NP_001273384.1
Original member Current member NCBI NM_021945.6 NP_068764.3 Accepted alive Link to Nucleotide Sequence:NM_021945.6Link to Protein Sequence:NP_068764.3Re-query CCDS DB by Nucleotide ID:NM_021945Re-query CCDS DB by Protein ID:NP_068764Link to BLAST:NP_068764.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273384.1 405 A1A5C7-2 405 100% 0 0
NP_068764.3 405 A1A5C7-2 405 100% 0 0

Chromosomal Locations for CCDS 34331.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3273055 3273412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3283852 3283975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3285079 3285111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3286859 3287091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3289764 3289866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3298091 3298218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3323834 3324002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3410188 3410257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGTTCAGCACACTCAGGTTCTTTGAAGGATTTTGCCTGGCTGGAATCATTCTCACCTTGTATGCTTTAC
GAATAGAGCTGTGCCCCCCTGGAAAACGGTTCATGATTACGATGGTGGCGAGCTTCGTGGCCATGGCGGG
CCAGTTCCTCATGCCTGGGCTAGCCGCCCTGTGCCGGGATTGGCAGGTGCTGCAGGCCCTCATCATCTGC
CCCTTCCTGCTCATGCTGCTCTACTGGTCGATATTCCCCGAGTCCCTCCGGTGGCTAATGGCCACCCAGC
AGTTTGAGTCTGCAAAGAGGCTGATCCTCCACTTCACACAGAAGAATCGCATGAACCCTGAGGGCGACAT
CAAGGGTGTGATACCAGAGCTGGAGAAAGAGCTTTCCCGGAGGCCCAAGAAGGTCTGCATCGTGAAGGTG
GTGGGGACACGGAACCTGTGGAAGAACATTGTGGTCCTGTGTGTGAACTCGCTGACGGGGTACGGGATCC
ACCACTGCTTTGCCAGGAGCATGATGGGCCACGAGGTGAAGGTGCCGCTCCTGGAGAACTTCTATGCTGA
CTACTATACCACGGCCAGCATCGCGCTGGTGTCCTGCCTGGCCATGTGCGTGGTGGTCCGATTCCTCGGG
CGCAGGGGAGGGCTGCTGCTCTTCATGATCCTCACCGCCCTGGCCTCACTCCTGCAGCTCGGCCTCCTCA
ACCTGATTGGAAAGTACAGCCAGCACCCAGACTCAGGGATGAGTGACAGCGTCAAGGACAAATTTTCCAT
CGCGTTTTCCATCGTGGGCATGTTTGCCTCCCATGCGGTGGGGAGCCTCAGCGTGTTCTTCTGTGCGGAG
ATCACCCCGACGGTGATAAGGTGTGGCGGGCTGGGGCTGGTGCTGGCCAGCGCGGGCTTCGGCATGCTGA
CGGCACCCATCATCGAGCTGCACAACCAGAAAGGCTACTTCCTGCACCACATCATCTTTGCCTGCTGCAC
GCTCATCTGCATCATCTGCATCCTCCTGCTGCCCGAGAGCAGGGACCAGAACCTGCCTGAGAACATTTCT
AACGGGGAGCACTACACGCGCCAGCCGCTGCTGCCGCACAAGAAGGGGGAGCAGCCACTGCTGCTCACCA
ACGCCGAGCTCAAGGACTACTCGGGCCTCCACGATGCCGCAGCCGCGGGTGACACACTGCCCGAGGGTGC
CACGGCCAACGGCATGAAGGCCATGTAG

Translation (405 aa):
MFSTLRFFEGFCLAGIILTLYALRIELCPPGKRFMITMVASFVAMAGQFLMPGLAALCRDWQVLQALIIC
PFLLMLLYWSIFPESLRWLMATQQFESAKRLILHFTQKNRMNPEGDIKGVIPELEKELSRRPKKVCIVKV
VGTRNLWKNIVVLCVNSLTGYGIHHCFARSMMGHEVKVPLLENFYADYYTTASIALVSCLAMCVVVRFLG
RRGGLLLFMILTALASLLQLGLLNLIGKYSQHPDSGMSDSVKDKFSIAFSIVGMFASHAVGSLSVFFCAE
ITPTVIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICILLLPESRDQNLPENIS
NGEHYTRQPLLPHKKGEQPLLLTNAELKDYSGLHDAAAAGDTLPEGATANGMKAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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