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Report for CCDS9812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9812.1 Public Homo sapiens 14 PSEN1 24 110 108 CCDS HistoryNCBI Gene:5663Re-query CCDS DB by CCDS ID:9812.1Re-query CCDS DB by GeneID:5663See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9812.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324501.10 ENSP00000326366.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324501.10Link to Ensembl Protein Viewer:ENSP00000326366.5Re-query CCDS DB by Nucleotide ID:ENST00000324501Re-query CCDS DB by Protein ID:ENSP00000326366
Original member Current member EBI ENST00000554131.6 ENSP00000451915.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554131.6Link to Ensembl Protein Viewer:ENSP00000451915.2Re-query CCDS DB by Nucleotide ID:ENST00000554131Re-query CCDS DB by Protein ID:ENSP00000451915
Original member Current member EBI ENST00000700267.1 ENSP00000514903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700267.1Link to Ensembl Protein Viewer:ENSP00000514903.1Re-query CCDS DB by Nucleotide ID:ENST00000700267Re-query CCDS DB by Protein ID:ENSP00000514903
Original member Current member EBI ENST00000700268.1 ENSP00000514904.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700268.1Link to Ensembl Protein Viewer:ENSP00000514904.1Re-query CCDS DB by Nucleotide ID:ENST00000700268Re-query CCDS DB by Protein ID:ENSP00000514904
Original member Current member EBI ENST00000700269.1 ENSP00000514905.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700269.1Link to Ensembl Protein Viewer:ENSP00000514905.1Re-query CCDS DB by Nucleotide ID:ENST00000700269Re-query CCDS DB by Protein ID:ENSP00000514905
Original member Current member EBI ENST00000700306.1 ENSP00000514933.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700306.1Link to Ensembl Protein Viewer:ENSP00000514933.1Re-query CCDS DB by Nucleotide ID:ENST00000700306Re-query CCDS DB by Protein ID:ENSP00000514933
Original member Current member EBI ENST00000700317.1 ENSP00000514944.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700317.1Link to Ensembl Protein Viewer:ENSP00000514944.1Re-query CCDS DB by Nucleotide ID:ENST00000700317Re-query CCDS DB by Protein ID:ENSP00000514944
Original member Current member EBI ENST00000700321.1 ENSP00000514948.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700321.1Link to Ensembl Protein Viewer:ENSP00000514948.1Re-query CCDS DB by Nucleotide ID:ENST00000700321Re-query CCDS DB by Protein ID:ENSP00000514948
Original member Current member EBI ENST00000700323.1 ENSP00000514950.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700323.1Link to Ensembl Protein Viewer:ENSP00000514950.1Re-query CCDS DB by Nucleotide ID:ENST00000700323Re-query CCDS DB by Protein ID:ENSP00000514950
Original member Current member EBI ENST00000700375.1 ENSP00000514966.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700375.1Link to Ensembl Protein Viewer:ENSP00000514966.1Re-query CCDS DB by Nucleotide ID:ENST00000700375Re-query CCDS DB by Protein ID:ENSP00000514966
Original member Current member EBI ENST00000700378.1 ENSP00000514968.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700378.1Link to Ensembl Protein Viewer:ENSP00000514968.1Re-query CCDS DB by Nucleotide ID:ENST00000700378Re-query CCDS DB by Protein ID:ENSP00000514968
Original member Current member NCBI NM_000021.4 NP_000012.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000021.4Link to Protein Sequence:NP_000012.1Re-query CCDS DB by Nucleotide ID:NM_000021Re-query CCDS DB by Protein ID:NP_000012Link to BLAST:NP_000012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000012.1 467 P49768-1 467 100% 0 0

Chromosomal Locations for CCDS 9812.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 73148020 73148106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73170797 73171047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73173566 73173707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73186853 73186920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73192644 73192864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73198031 73198129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73206386 73206472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73211769 73211942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73217126 73217244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73219134 73219289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGACAGAGTTACCTGCACCGTTGTCCTACTTCCAGAATGCACAGATGTCTGAGGACAACCACCTGAGCA
ATACTGTACGTAGCCAGAATGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCC
TGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGAT
GAGGAGCTGACATTGAAATATGGCGCCAAGCATGTGATCATGCTCTTTGTCCCTGTGACTCTCTGCATGG
TGGTGGTCGTGGCTACCATTAAGTCAGTCAGCTTTTATACCCGGAAGGATGGGCAGCTAATCTATACCCC
ATTCACAGAAGATACCGAGACTGTGGGCCAGAGAGCCCTGCACTCAATTCTGAATGCTGCCATCATGATC
AGTGTCATTGTTGTCATGACTATCCTCCTGGTGGTTCTGTATAAATACAGGTGCTATAAGGTCATCCATG
CCTGGCTTATTATATCATCTCTATTGTTGCTGTTCTTTTTTTCATTCATTTACTTGGGGGAAGTGTTTAA
AACCTATAACGTTGCTGTGGACTACATTACTGTTGCACTCCTGATCTGGAATTTTGGTGTGGTGGGAATG
ATTTCCATTCACTGGAAAGGTCCACTTCGACTCCAGCAGGCATATCTCATTATGATTAGTGCCCTCATGG
CCCTGGTGTTTATCAAGTACCTCCCTGAATGGACTGCGTGGCTCATCTTGGCTGTGATTTCAGTATATGA
TTTAGTGGCTGTTTTGTGTCCGAAAGGTCCACTTCGTATGCTGGTTGAAACAGCTCAGGAGAGAAATGAA
ACGCTTTTTCCAGCTCTCATTTACTCCTCAACAATGGTGTGGTTGGTGAATATGGCAGAAGGAGACCCGG
AAGCTCAAAGGAGAGTATCCAAAAATTCCAAGTATAATGCAGAAAGCACAGAAAGGGAGTCACAAGACAC
TGTTGCAGAGAATGATGATGGCGGGTTCAGTGAGGAATGGGAAGCCCAGAGGGACAGTCATCTAGGGCCT
CATCGCTCTACACCTGAGTCACGAGCTGCTGTCCAGGAACTTTCCAGCAGTATCCTCGCTGGTGAAGACC
CAGAGGAAAGGGGAGTAAAACTTGGATTGGGAGATTTCATTTTCTACAGTGTTCTGGTTGGTAAAGCCTC
AGCAACAGCCAGTGGAGACTGGAACACAACCATAGCCTGTTTCGTAGCCATATTAATTGGTTTGTGCCTT
ACATTATTACTCCTTGCCATTTTCAAGAAAGCATTGCCAGCTCTTCCAATCTCCATCACCTTTGGGCTTG
TTTTCTACTTTGCCACAGATTATCTTGTACAGCCTTTTATGGACCAATTAGCATTCCATCAATTTTATAT
CTAG

Translation (467 aa):
MTELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEED
EELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTEDTETVGQRALHSILNAAIMI
SVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGM
ISIHWKGPLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE
TLFPALIYSSTMVWLVNMAEGDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGP
HRSTPESRAAVQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL
TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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