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Report for CCDS46554.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46554.2 Public Homo sapiens 2 RBM44 24 110 108 CCDS HistoryNCBI Gene:375316Re-query CCDS DB by CCDS ID:46554.2See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 46554.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316997.9 ENSP00000321179.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316997.9Link to Ensembl Protein Viewer:ENSP00000321179.5Re-query CCDS DB by Nucleotide ID:ENST00000316997Re-query CCDS DB by Protein ID:ENSP00000321179
Original member Current member EBI ENST00000409864.6 ENSP00000386727.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409864.6Link to Ensembl Protein Viewer:ENSP00000386727.2Re-query CCDS DB by Nucleotide ID:ENST00000409864Re-query CCDS DB by Protein ID:ENSP00000386727
Original member Current member NCBI NM_001080504.3 NP_001073973.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080504.3Link to Protein Sequence:NP_001073973.3Re-query CCDS DB by Nucleotide ID:NM_001080504Re-query CCDS DB by Protein ID:NP_001073973Link to BLAST:NP_001073973.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073973.3 1051 Q6ZP01 1051 100% 0 0

Chromosomal Locations for CCDS 46554.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 237813610 237813682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237816993 237818596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237818901 237818959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237820175 237820351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237821071 237821254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237821346 237821368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237821743 237821827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237823440 237823554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237824291 237824419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237827250 237827329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237827433 237827503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237829217 237829502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237833997 237834142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237834278 237834401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3156 nt):
ATGCAGGCCACTGCAGTGGTGGAGACAGCATCTGGTAAAGGCTACCACAGTAATGGAGGCAACCTCCAAA
AAGATAAACCTTCAAATCCAAAGAAAGAAAATTTGTTATTATCCTCCAATGGTTGTGATGAAGTCAAATT
GACTTTTCCTGATGATGACTGGAATTCTTCGACACTAGAGCAAAGAGCTAATAATAAAGAAATCAGCAAT
ATTGACAAAATGGATTTATTAGAGCCATTTTTTTCAGTGAGTCAAGATACTAACACAGAGAGTACTCAGT
TTCAGTCAAGTGAACTTGAAGACAGTACTGACTATGCTTTCTTGAATAAAACATATTCTATACCTTATTC
AGAGTCAAAACTAAAGAAGGAAAGTCTTACTCCTTTAAGTTCAGAATTAGATCCTGAAGTGCAGAAAAAA
GAGGAGGTTTTTTTTAATATTTTGGAACATCAAGATAAGACTGTTGGCTTGGAAAGAATCTACAATATTT
CAGATGCTAATTATAGAGAAAGTGCTGAAGATACACAAAAGCATGATACAGATGAAGACTCACAGCAGGA
ATATCACAGTGCAGAAGAACAAGAATACATAAGTAACCATTTATCTTTTGACCAAACAAAAGCATTAGAT
ATATCTAATCCAGAAGTTGTTGAATTAGGAAATTCGGGTTATGAAGTTAAATGTGCTAGCAATGTAGAAG
ATAATCGTGTTAACTCGGGAAGTGGTTCTATCATCTCTTTCGATTCACTTGATGTTTATGGACAAGAAGA
GTCACTTCATGTCTCCAAATTTCAGAATTCTGTTATGTTAAGAGAATATCATGACCTAAAGCATGAAAAG
TATAAGGAACAAGAGACTAATTCAATGTACCACACTGTATTTGATGGCAGTGTACTAAGAAGCAATTCTC
CAGGAAACCAGGAATCTCAATCTAAGAGTGGTTCCTTGAGCCCTCAAAAAGTATTAAAAATGAAAATTTA
TACTGAAAACATGAAATCTCAAATAAATGAAGGTAAAGATTTTTGTGGAAATAAAATTGTTGAGAACAAA
ATATTACTGCACCTTGAAAATCCTAGCACATTACCACAGGATAAAGCTTTAGAGACATTACTCCAACCCT
GTAAAGATTGTCAAACTTCCTGGACCTCTGTTTTTGATGATTCGATAATTTCTGCCTGTGGATATTATGA
AAGCCTACAAAACACTGCTGACTCAGCCTTAGATTTTTCTGCTATGCTACCAAAGATCGCAGTCAGAGAT
AATCAGGCAATAGAAGATAATACGTCCCTAAAAGTTGCTCATAGCAGTACCACAAAGAAAACATGCTTTC
ACAATATAGGAGAAATGTGTACTAAATCATTGACAGATGCAGCAAGTTGTACAGTCACAATTAATCAGAC
AGTGGACGTTAGCACTGATTTTAGGGCTTGTTTCACAACCAGCAGGGCAACAAGTGCAAGACCTTCTGTA
GTATCTACATCAAGCAACACAGAGATAACAATGATGAATAAAAAACGACCTGATGAATGGCAAAATGAGA
AACAAAAAAGTGTGGCTTGTAGTACAGATTGGTCATACAGTGAAGATTGTATAGATACACAGATGGCTAT
AACAAAAGGATCAGGAAAATCTCTCTCCGTTGACAGTTTAAAACCTAATGGAAATTTTCTAAATAAGGAT
TTCCTGGAATTAAGAAAAGCATGTGGTATCACAGACCTAAAGAAACATCCTGAGAGGGAATTTCAACTTT
TTAAAGATACAGAGAAGGATTTGCCATCAATGTGCTGTCAGAAGATAATGCAGAGAGCCATAAAAGCAGA
GCTGCACCTTTTAAATGTTCACTATCAGATGTGTCGTCGCCATTGTTGTGATATTTACAAACTTGTCATG
GAAAATAGGGAAGGATTAAATATGAATTTATCAAGTAATTCTGCTAAGAAGGAATTGGGATCAGCACTAC
TGTCTCTTTTGGGGGACTTAAAAGTTAGATATGTGACTTTGAAAGAAAAAATACACAAAGGCATACCACT
GGAAGAGCTGCCCCCACTGTCACTAGAATCAAAATTATTATCTACCTTCTCTACTTTTGCTTCCAGGCTA
ATGAAAAAAGAAACACATGTCTTTTCAGAAGCAGATGCTGAACAAGATAATCAGAGGGCTCATGATGTTG
ATGTTTCTTCAAACCTAAAAAAGACACTCTCTCAAATGTCTTTATCATCTGACAATAGTCATGCTACACA
AAACATATCACCCAAGAAAGATGACTTTAAAAATGGTGATATAAATGCAGACTTTAGTCAACTGAAACTT
GGTGATAAAGACTGCAGACATTACCAAGAGACAAGCGAAGACTGGTCTGATGCTAAAGAGAGCCTGACAG
GAGTTGACGTCTCAGGGACACAGGGAAATCAAGTAGAACAAGACACATGGAATTTGGATCTTACAGGAGA
AATGAAGAATGTTGAACCCTCACAAAGAGATAAAGGTTATTTGATACATGTTGGTGGCCTCTGCCCTTCA
GTATCTGAGGCCGATTTAAGGTCTCATTTCCAAAAATACCAAGTTTCTGAAATTTCAATTTATGATTCTA
CTAATTACAGATATGCATCTCTTGCTTTTACAAAAAACAGCGATGCAAAGATAGCTGTGAAAGAAATGAA
TGGGATAGAAATAAATGGAAAGTCAGTAAATGTGTGGCCTGTTAAAATTCTTGGAGAATATACATCACCA
CTTTCCTCCAAAAATGGGAATAGAATTAGTTCGAATAATTTAGAGAAAAGCACCAACAAACAAATCCACT
CAGAATTCTCCATTTCTAGATTGCCCAGAACTAGGCCACGGCAGCTGGGTTCTGAGCAAGACAGTGAGGT
TTTCCCTTCCGACCAGGGTGTCAAGAAGAATTGTAAGCAGATTGAATCTGCTAAATTATTACCTGATACA
CCCGTTCAATTCATACCTCCAAATACATTGAACCTTCGTAGCTTTACCAAGATCATAAAGAGACTGGCTG
AACTGCATCCAGAAGTCAGCAGAGACCATATTATAAATGCACTTCAGGAAGTGAGAATAAGACATAAAGG
TTTTCTGAATGGCTTATCTATTACTACTATTGTGGAGATGACTTCATCTCTTCTGAAAAACTCTGCTTCC
AGTTAG

Translation (1051 aa):
MQATAVVETASGKGYHSNGGNLQKDKPSNPKKENLLLSSNGCDEVKLTFPDDDWNSSTLEQRANNKEISN
IDKMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQKK
EEVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHDTDEDSQQEYHSAEEQEYISNHLSFDQTKALD
ISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSIISFDSLDVYGQEESLHVSKFQNSVMLREYHDLKHEK
YKEQETNSMYHTVFDGSVLRSNSPGNQESQSKSGSLSPQKVLKMKIYTENMKSQINEGKDFCGNKIVENK
ILLHLENPSTLPQDKALETLLQPCKDCQTSWTSVFDDSIISACGYYESLQNTADSALDFSAMLPKIAVRD
NQAIEDNTSLKVAHSSTTKKTCFHNIGEMCTKSLTDAASCTVTINQTVDVSTDFRACFTTSRATSARPSV
VSTSSNTEITMMNKKRPDEWQNEKQKSVACSTDWSYSEDCIDTQMAITKGSGKSLSVDSLKPNGNFLNKD
FLELRKACGITDLKKHPEREFQLFKDTEKDLPSMCCQKIMQRAIKAELHLLNVHYQMCRRHCCDIYKLVM
ENREGLNMNLSSNSAKKELGSALLSLLGDLKVRYVTLKEKIHKGIPLEELPPLSLESKLLSTFSTFASRL
MKKETHVFSEADAEQDNQRAHDVDVSSNLKKTLSQMSLSSDNSHATQNISPKKDDFKNGDINADFSQLKL
GDKDCRHYQETSEDWSDAKESLTGVDVSGTQGNQVEQDTWNLDLTGEMKNVEPSQRDKGYLIHVGGLCPS
VSEADLRSHFQKYQVSEISIYDSTNYRYASLAFTKNSDAKIAVKEMNGIEINGKSVNVWPVKILGEYTSP
LSSKNGNRISSNNLEKSTNKQIHSEFSISRLPRTRPRQLGSEQDSEVFPSDQGVKKNCKQIESAKLLPDT
PVQFIPPNTLNLRSFTKIIKRLAELHPEVSRDHIINALQEVRIRHKGFLNGLSITTIVEMTSSLLKNSAS
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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