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Report for CCDS4181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4181.1 Public Homo sapiens 5 CATSPER3 24 110 108 CCDS HistoryNCBI Gene:347732Re-query CCDS DB by CCDS ID:4181.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4181.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282611.8 ENSP00000282611.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282611.8Link to Ensembl Protein Viewer:ENSP00000282611.6Re-query CCDS DB by Nucleotide ID:ENST00000282611Re-query CCDS DB by Protein ID:ENSP00000282611
Original member Current member NCBI NM_178019.3 NP_821138.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178019.3Link to Protein Sequence:NP_821138.1Re-query CCDS DB by Nucleotide ID:NM_178019Re-query CCDS DB by Protein ID:NP_821138Link to BLAST:NP_821138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_821138.1 398 Q86XQ3 398 100% 0 0

Chromosomal Locations for CCDS 4181.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134967992 134968089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134969939 134970092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134996273 134996512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135007957 135008139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135008841 135008981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135009371 135009490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135010373 135010530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135011521 135011623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGTCTCAACACCGTCACCAGCGCCACTCGAGAGTCATTTCTAGTTCACCAGTTGACACTACATCGGTGG
GATTTTGCCCAACATTCAAGAAATTTAAGAGGAACGATGATGAATGTCGGGCATTTGTGAAGAGAGTCAT
AATGAGCCGTTTCTTTAAGATAATTATGATTAGCACTGTCACATCGAATGCGTTTTTTATGGCCTTGTGG
ACCAGTTATGACATAAGGTACCGCTTGTTCAGACTTCTTGAGTTCTCGGAGATCTTCTTTGTGTCCATCT
GCACATCTGAGTTGTCCATGAAGGTCTATGTGGACCCCATCAACTACTGGAAGAACGGCTACAACCTGCT
GGATGTGATCATTATCATCGTTATGTTTTTACCCTATGCCCTCCGCCAGCTCATGGGCAAACAGTTCACT
TACCTGTATATCGCTGATGGCATGCAGTCCCTGCGCATCCTCAAGCTTATCGGCTATAGCCAGGGCATCC
GGACGCTGATCACCGCCGTGGGGCAGACAGTCTACACCGTGGCCTCTGTGCTCCTCCTGCTCTTCCTCCT
CATGTACATCTTCGCTATCTTGGGCTTCTGCCTGTTTGGATCTCCAGACAATGGTGACCATGATAACTGG
GGGAACCTGGCTGCAGCTTTTTTCACCCTCTTCAGCTTGGCCACGGTTGATGGCTGGACAGACCTGCAGA
AGCAGTTGGACAATCGGGAATTTGCTTTGAGCCGGGCATTCACCATCATCTTCATCTTGCTCGCCTCTTT
CATCTTCCTCAACATGTTCGTGGGTGTGATGATCATGCACACAGAGGACTCCATCAGAAAGTTTGAGCGA
GAGCTGATGTTGGAGCAGCAGGAGATGCTCATGGGAGAGAAGCAGGTGATTCTGCAGCGGCAGCAGGAGG
AGATCAGCAGGCTGATGCACATACAGAAAAATGCTGACTGCACAAGTTTCAGTGAGCTGGTGGAGAACTT
TAAGAAGACCTTGAGCCACACTGACCCAATGGTCTTGGATGATTTTGGCACTAGCTTACCCTTCATCGAT
ATCTACTTTTCCACTCTGGACTACCAGGACACAACTGTCCACAAGCTTCAAGAGCTGTACTATGAGATCG
TGCATGTGCTGAGCCTAATGCTGGAAGACTTGCCCCAGGAGAAGCCCCAGTCCTTGGAAAAGGTGGATGA
GAAGTAG

Translation (398 aa):
MSQHRHQRHSRVISSSPVDTTSVGFCPTFKKFKRNDDECRAFVKRVIMSRFFKIIMISTVTSNAFFMALW
TSYDIRYRLFRLLEFSEIFFVSICTSELSMKVYVDPINYWKNGYNLLDVIIIIVMFLPYALRQLMGKQFT
YLYIADGMQSLRILKLIGYSQGIRTLITAVGQTVYTVASVLLLLFLLMYIFAILGFCLFGSPDNGDHDNW
GNLAAAFFTLFSLATVDGWTDLQKQLDNREFALSRAFTIIFILLASFIFLNMFVGVMIMHTEDSIRKFER
ELMLEQQEMLMGEKQVILQRQQEEISRLMHIQKNADCTSFSELVENFKKTLSHTDPMVLDDFGTSLPFID
IYFSTLDYQDTTVHKLQELYYEIVHVLSLMLEDLPQEKPQSLEKVDEK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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