NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
523.1 Public Homo sapiens 1 AKR1A1 24 110 108 CCDS HistoryNCBI Gene:10327Re-query CCDS DB by CCDS ID:523.1Re-query CCDS DB by GeneID:10327See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 523.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351829.9 ENSP00000312606.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000351829.9Link to Ensembl Protein Viewer:ENSP00000312606.4Re-query CCDS DB by Nucleotide ID:ENST00000351829Re-query CCDS DB by Protein ID:ENSP00000312606
Original member Current member EBI ENST00000372070.7 ENSP00000361140.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372070.7Link to Ensembl Protein Viewer:ENSP00000361140.3Re-query CCDS DB by Nucleotide ID:ENST00000372070Re-query CCDS DB by Protein ID:ENSP00000361140
Original member Current member EBI ENST00000621846.4 ENSP00000480713.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621846.4Link to Ensembl Protein Viewer:ENSP00000480713.1Re-query CCDS DB by Nucleotide ID:ENST00000621846Re-query CCDS DB by Protein ID:ENSP00000480713
Original member Current member NCBI NM_001202413.2 NP_001189342.1 Accepted alive Link to Nucleotide Sequence:NM_001202413.2Link to Protein Sequence:NP_001189342.1Re-query CCDS DB by Nucleotide ID:NM_001202413Re-query CCDS DB by Protein ID:NP_001189342Link to BLAST:NP_001189342.1
Original member Current member NCBI NM_001202414.2 NP_001189343.1 Accepted alive Link to Nucleotide Sequence:NM_001202414.2Link to Protein Sequence:NP_001189343.1Re-query CCDS DB by Nucleotide ID:NM_001202414Re-query CCDS DB by Protein ID:NP_001189343Link to BLAST:NP_001189343.1
Original member Current member NCBI NM_006066.4 NP_006057.1 Accepted alive Link to Nucleotide Sequence:NM_006066.4Link to Protein Sequence:NP_006057.1Re-query CCDS DB by Nucleotide ID:NM_006066Re-query CCDS DB by Protein ID:NP_006057Link to BLAST:NP_006057.1
Original member Current member NCBI NM_153326.3 NP_697021.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153326.3Link to Protein Sequence:NP_697021.1Re-query CCDS DB by Nucleotide ID:NM_153326Re-query CCDS DB by Protein ID:NP_697021Link to BLAST:NP_697021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001189342.1 325 P14550 325 100% 0 0
NP_001189343.1 325 P14550 325 100% 0 0
NP_006057.1 325 P14550 325 100% 0 0
NP_697021.1 325 P14550 325 100% 0 0

Chromosomal Locations for CCDS 523.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45561795 45561878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45566569 45566688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45566869 45567020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45567982 45568177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45568485 45568684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45568927 45568999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45569143 45569229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45569891 45569956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCGGCTTCCTGTGTTCTACTGCACACTGGGCAGAAGATGCCTCTGATTGGTCTGGGTACCTGGAAGA
GTGAGCCTGGTCAGGTAAAAGCAGCTGTTAAGTATGCCCTTAGCGTAGGCTACCGCCACATTGATTGTGC
TGCTATCTACGGCAATGAGCCTGAGATTGGGGAGGCCCTGAAGGAGGACGTGGGACCAGGCAAGGCGGTG
CCTCGGGAGGAGCTGTTTGTGACATCCAAGCTGTGGAACACCAAGCACCACCCCGAGGATGTGGAGCCTG
CCCTCCGGAAGACTCTGGCTGACCTCCAGCTGGAGTATCTGGACCTGTACCTGATGCACTGGCCTTATGC
CTTTGAGCGGGGAGACAACCCCTTCCCCAAGAATGCTGATGGGACTATATGCTACGACTCCACCCACTAC
AAGGAGACTTGGAAGGCTCTGGAGGCACTGGTGGCTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAACT
TCAACAGTCGGCAGATTGATGACATACTCAGTGTGGCCTCCGTGCGTCCAGCTGTCTTGCAGGTGGAATG
CCACCCATACTTGGCTCAAAATGAGCTAATTGCCCACTGCCAAGCACGTGGCCTGGAGGTAACTGCTTAT
AGCCCTTTGGGCTCCTCTGATCGTGCATGGCGTGATCCTGATGAGCCTGTCCTGCTGGAGGAACCAGTAG
TCCTGGCATTGGCTGAAAAGTATGGCCGATCTCCAGCTCAGATCTTGCTCAGGTGGCAGGTCCAGCGGAA
AGTGATCTGCATCCCCAAAAGTATCACTCCTTCTCGAATCCTTCAGAACATCAAGGTGTTTGACTTCACC
TTTAGCCCAGAAGAGATGAAGCAGCTAAATGCCCTGAACAAAAATTGGAGATATATTGTGCCTATGCTTA
CGGTGGATGGGAAGAGAGTCCCAAGGGATGCAGGGCATCCTCTGTACCCCTTTAATGACCCGTACTGA

Translation (325 aa):
MAASCVLLHTGQKMPLIGLGTWKSEPGQVKAAVKYALSVGYRHIDCAAIYGNEPEIGEALKEDVGPGKAV
PREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTICYDSTHY
KETWKALEALVAKGLVQALGLSNFNSRQIDDILSVASVRPAVLQVECHPYLAQNELIAHCQARGLEVTAY
SPLGSSDRAWRDPDEPVLLEEPVVLALAEKYGRSPAQILLRWQVQRKVICIPKSITPSRILQNIKVFDFT
FSPEEMKQLNALNKNWRYIVPMLTVDGKRVPRDAGHPLYPFNDPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH