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Report for CCDS13447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13447.1 Public Homo sapiens 20 DOK5 24 110 108 CCDS HistoryNCBI Gene:55816Re-query CCDS DB by CCDS ID:13447.1Re-query CCDS DB by GeneID:55816See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395939.5 ENSP00000379270.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395939.5Link to Ensembl Protein Viewer:ENSP00000379270.1Re-query CCDS DB by Nucleotide ID:ENST00000395939Re-query CCDS DB by Protein ID:ENSP00000379270
Original member Current member NCBI NM_177959.3 NP_808874.1 Accepted alive Link to Nucleotide Sequence:NM_177959.3Link to Protein Sequence:NP_808874.1Re-query CCDS DB by Nucleotide ID:NM_177959Re-query CCDS DB by Protein ID:NP_808874Link to BLAST:NP_808874.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808874.1 198 Q9P104-2 198 100% 0 0

Chromosomal Locations for CCDS 13447.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 54588722 54588806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54591616 54591805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54610388 54610523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54643458 54643578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54650415 54650479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGAGTGTGTAGGAACACGGATCAATGACATCAGCCTTGGAGAGCCTGACTTACTGGCCACTGGGGTTG
AGAGAGAACAGAGTGAGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATG
TGCCTTGCAGATTACATATGAGTATATCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCT
TGGCCGCTAAGCGCCCTGCGGCGGTATGGACGTGATACTACGTGGTTCACTTTTGAGGCAGGGAGGATGT
GTGAGACTGGTGAAGGGCTGTTTATCTTTCAGACCCGAGACGGGGAGGCCATCTATCAGAAAGTCCACTC
TGCTGCCTTGGCCATAGCCGAGCAGCACGAGCGCTTGCTACAGAGTGTGAAAAACTCGATGCTCCAGATG
AAGATGAGTGAGCGGGCCGCCTCGCTGAGCACCATGGTGCCCCTGCCTCGCAGCGCCTACTGGCAGCACA
TCACACGGCAGCACAGCACGGGACAGCTCTACCGCTTGCAAGATGTTTCCAGCCCTCTGAAGCTTCATCG
AACAGAGACTTTTCCAGCCTACAGATCTGAGCACTGA

Translation (198 aa):
MECVGTRINDISLGEPDLLATGVEREQSERFNVYLMPSPNLDVHGECALQITYEYICLWDVQNPRVKLIS
WPLSALRRYGRDTTWFTFEAGRMCETGEGLFIFQTRDGEAIYQKVHSAALAIAEQHERLLQSVKNSMLQM
KMSERAASLSTMVPLPRSAYWQHITRQHSTGQLYRLQDVSSPLKLHRTETFPAYRSEH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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