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Report for CCDS8154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8154.1 Public Homo sapiens 11 SYT12 24 110 108 CCDS HistoryNCBI Gene:91683Re-query CCDS DB by CCDS ID:8154.1Re-query CCDS DB by GeneID:91683See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8154.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393946.6 ENSP00000377520.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393946.6Link to Ensembl Protein Viewer:ENSP00000377520.2Re-query CCDS DB by Nucleotide ID:ENST00000393946Re-query CCDS DB by Protein ID:ENSP00000377520
Original member Current member EBI ENST00000525457.5 ENSP00000431400.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525457.5Link to Ensembl Protein Viewer:ENSP00000431400.1Re-query CCDS DB by Nucleotide ID:ENST00000525457Re-query CCDS DB by Protein ID:ENSP00000431400
Original member Current member EBI ENST00000527043.6 ENSP00000435316.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000527043.6Link to Ensembl Protein Viewer:ENSP00000435316.1Re-query CCDS DB by Nucleotide ID:ENST00000527043Re-query CCDS DB by Protein ID:ENSP00000435316
Original member Current member NCBI NM_001177880.2 NP_001171351.1 Accepted alive Link to Nucleotide Sequence:NM_001177880.2Link to Protein Sequence:NP_001171351.1Re-query CCDS DB by Nucleotide ID:NM_001177880Re-query CCDS DB by Protein ID:NP_001171351Link to BLAST:NP_001171351.1
Original member Current member NCBI NM_177963.4 NP_808878.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177963.4Link to Protein Sequence:NP_808878.1Re-query CCDS DB by Nucleotide ID:NM_177963Re-query CCDS DB by Protein ID:NP_808878Link to BLAST:NP_808878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171351.1 421 Q8IV01 421 100% 0 0
NP_808878.1 421 Q8IV01 421 100% 0 0

Chromosomal Locations for CCDS 8154.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67030145 67030178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67034645 67034838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67039811 67040203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67043638 67043853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67044593 67044713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67045744 67045877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67048584 67048757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCTGTGGATGTGGCAGAATACCATCTGAGCGTCATCAAGAGCCCCCCTGGCTGGGAGGTGGGTGTCT
ATGCTGCAGGGGCCCTGGCCCTGCTGGGAATCGCAGCTGTGAGCCTGTGGAAGCTCTGGACGTCGGGGAG
CTTCCCCAGCCCCTCTCCGTTCCCCAATTACGACTACAGGTACCTTCAGCAGAAGTACGGCGAGAGCTGC
GCAGAGGCCAGGGAGAAGAGAGTGCCTGCCTGGAATGCCCAGCGGGCCAGCACGCGGGGACCACCCAGCC
GCAAAGGCAGTCTCAGCATTGAGGACACCTTTGAGAGCATCAGTGAACTGGGGCCTCTGGAGCTGATGGG
CCGGGAGTTGGACCTGGCCCCCTATGGGACCCTCCGGAAGTCCCAGTCGGCCGACTCCCTGAACTCCATC
TCCTCCGTGAGCAACACCTTTGGGCAGGACTTCACACTGGGCCAGGTGGAGGTGAGCATGGAGTACGACA
CTGCCTCCCACACGCTGAACGTGGCGGTGATGCAGGGCAAGGACCTCCTGGAGCGGGAGGAGGCCAGCTT
CGAGTCCTGCTTCATGCGCGTCAGCCTGCTGCCGGACGAGCAGATCGTGGGCATTTCTCGGATCCAGAGA
AATGCCTACTCCATCTTCTTTGATGAGAAGTTCTCCATCCCCCTGGATCCCACAGCCCTGGAGGAGAAGA
GCCTGCGGTTTTCTGTATTTGGCATCGATGAGGATGAGCGCAACGTCAGCACGGGGGTGGTGGAGCTGAA
GCTTTCTGTGCTTGACCTCCCGCTGCAGCCCTTCAGTGGCTGGCTCTATTTACAGGACCAGAACAAGGCC
GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCTCCCCACAGCCGAGCGCCTCACCGTGGTCG
TGGTTAAGGCCAAGAACCTCATCTGGACCAACGACAAGACCACAGCGGACCCCTTCGTCAAGGTGTACCT
GCTGCAGGATGGGAGGAAGATGAGCAAAAAGAAGACAGCCGTGAAGAGGGATGACCCCAACCCGGTGTTC
AACGAAGCCATGATCTTCTCGGTGCCAGCCATTGTGCTCCAGGACCTGTCTCTCCGCGTGACGGTGGCTG
AGAGCAGCAGCGACGGCCGTGGGGACAACGTGGGCCATGTCATCATTGGGCCGTCAGCCAGTGGCATGGG
AACCACACATTGGAACCAGATGTTGGCCACGCTGCGCAGGCCCGTGTCCATGTGGCACGCTGTCCGGCGA
AACTAG

Translation (421 aa):
MAVDVAEYHLSVIKSPPGWEVGVYAAGALALLGIAAVSLWKLWTSGSFPSPSPFPNYDYRYLQQKYGESC
AEAREKRVPAWNAQRASTRGPPSRKGSLSIEDTFESISELGPLELMGRELDLAPYGTLRKSQSADSLNSI
SSVSNTFGQDFTLGQVEVSMEYDTASHTLNVAVMQGKDLLEREEASFESCFMRVSLLPDEQIVGISRIQR
NAYSIFFDEKFSIPLDPTALEEKSLRFSVFGIDEDERNVSTGVVELKLSVLDLPLQPFSGWLYLQDQNKA
ADAVGEILLSLSYLPTAERLTVVVVKAKNLIWTNDKTTADPFVKVYLLQDGRKMSKKKTAVKRDDPNPVF
NEAMIFSVPAIVLQDLSLRVTVAESSSDGRGDNVGHVIIGPSASGMGTTHWNQMLATLRRPVSMWHAVRR
N


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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