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Report for CCDS53473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53473.1 Public Homo sapiens 1 HHAT 24 110 108 CCDS HistoryNCBI Gene:55733Re-query CCDS DB by CCDS ID:53473.1Re-query CCDS DB by GeneID:55733See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541565.5 ENSP00000444995.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541565.5Link to Ensembl Protein Viewer:ENSP00000444995.1Re-query CCDS DB by Nucleotide ID:ENST00000541565Re-query CCDS DB by Protein ID:ENSP00000444995
Original member Current member NCBI NM_001170564.3 NP_001164035.1 Accepted alive Link to Nucleotide Sequence:NM_001170564.3Link to Protein Sequence:NP_001164035.1Re-query CCDS DB by Nucleotide ID:NM_001170564Re-query CCDS DB by Protein ID:NP_001164035Link to BLAST:NP_001164035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164035.1 356 Q5VTY9-6 356 100% 0 0

Chromosomal Locations for CCDS 53473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 210348976 210349066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210362852 210362919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210387468 210387581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210418154 210418325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210464505 210464655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210513153 210513188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210587898 210588099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210623526 210623670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210674288 210674379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGCTGCCCCGATGGGAACTGGCACTTTACCTACTTGCCTCACTAGGCTTCCACTTCTATTCCTTCTATG
AAGTTTACAAAGTCTCCAGAGAACACGAAGAGGAGCTGGACCAGGAATTTGAGCTGGAGACTGACACTTT
ATTTGGAGGATTAAAGAAGGATGCGACCGACTTTGAGTGGAGCTTCTGGATGGAATGGGGGAAGCAGTGG
CTGGTGTGGCTTCTCCTTGGCCACATGGTAGTGTCTCAAATGGCCACACTGCTGGCAAGAAAGATGCAGC
AGCAGGAGCATGACTCCCTGAAGGCCAGCCTGTGTGTCCTGGCCCTGGGGCTGGGCCGCCTTCTTTGCTG
GTGGTGGCTGGCCGAGCTGATGGCTCACCTGATGTACATGCATGCCATCTACAGCAGCATCCCCCTCCTG
GAGACTGTCTCTTGTTGGACCTTAGGAGGACTGGCGTTAGCCCAGGTGCTCTTTTTCTACGTGAAGTACT
TGGTGCTCTTTGGCGTGCCTGCTCTGCTCATGCGCCTGGATGGACTCACTCCACCCGCCCTCCCCCGCTG
CGTGAGCACCATGTTCAGTTTCACCGGGATGTGGAGGTATTTTGATGTTGGACTGCATAATTTCTTAATC
AGGTATGTGTACATTCCAGTGGGCGGGTCCCAGCATGGCCTGCTGGGGACACTGTTTTCCACGGCGATGA
CATTTGCATTTGTGAGCTACTGGCATGGCGGCTACGACTACCTCTGGTGCTGGGCAGCGCTCAACTGGCT
GGGAGTCACTGTGGAGAATGGAGTCCGGAGGCTGGTGGAGACTCCCTGCATCCAGGACAGTCTGGCCCGA
TACTTCTCCCCACAAGCTCGCCGTCGATTCCACGCTGCCCTTGCTTCTTGTTCCACCTCGATGCTGATCC
TGTCCAACCTGGTATTTCTTGGGGGCAATGAGGTTGGGAAAACCTACTGGAATAGGATCTTCATACAAGG
CTGGCCTTGGGTGACCCTCTCTGTCCTGGGATTCCTGTACTGCTACTCCCACGTGGGCATTGCCTGGGCC
CAGACCTACGCCACGGACTAA

Translation (356 aa):
MLPRWELALYLLASLGFHFYSFYEVYKVSREHEEELDQEFELETDTLFGGLKKDATDFEWSFWMEWGKQW
LVWLLLGHMVVSQMATLLARKMQQQEHDSLKASLCVLALGLGRLLCWWWLAELMAHLMYMHAIYSSIPLL
ETVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPALPRCVSTMFSFTGMWRYFDVGLHNFLI
RYVYIPVGGSQHGLLGTLFSTAMTFAFVSYWHGGYDYLWCWAALNWLGVTVENGVRRLVETPCIQDSLAR
YFSPQARRRFHAALASCSTSMLILSNLVFLGGNEVGKTYWNRIFIQGWPWVTLSVLGFLYCYSHVGIAWA
QTYATD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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