NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14134.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14134.2 Public Homo sapiens X GPR143 24 110 108 CCDS HistoryNCBI Gene:4935Re-query CCDS DB by CCDS ID:14134.2Re-query CCDS DB by GeneID:4935See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 14134.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data and publications. The update is in accordance with the representations of both the Retina International Mutations of the OA1 Gene Database, and the Albinism Database. The previous representation used an upstream in-frame start codon that resulted in a 20 aa longer N-terminus. According to the ribosome scanning model of translation, the weak Kozak signal of the upstream start codon would make it subject to leaky scanning, and thus the downstream start codon, which has a stronger Kozak signal, would be used. However, there is no experimental evidence showing which start codon is used in vivo. Thus, the use of the upstream start codon, at least some of the time, cannot be ruled out.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14134.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000467482.6 ENSP00000417161.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000467482.6Link to Ensembl Protein Viewer:ENSP00000417161.1Re-query CCDS DB by Nucleotide ID:ENST00000467482Re-query CCDS DB by Protein ID:ENSP00000417161
Original member Current member NCBI NM_000273.3 NP_000264.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000273.3Link to Protein Sequence:NP_000264.2Re-query CCDS DB by Nucleotide ID:NM_000273Re-query CCDS DB by Protein ID:NP_000264Link to BLAST:NP_000264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000264.2 404 P51810 404 100% 0 0

Chromosomal Locations for CCDS 14134.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9725746 9725840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9739485 9739719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9741338 9741455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9743565 9743673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9746044 9746153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9748574 9748666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9759332 9759426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9760717 9760826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9765568 9765817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGCCTCCCCGCGCCTAGGGACCTTCTGCTGCCCCACGCGGGACGCAGCCACGCAGCTCGTGCTGAGCT
TCCAGCCGCGGGCCTTCCACGCGCTCTGCCTGGGCAGCGGCGGGCTCCGCTTGGCGCTGGGCCTTCTGCA
GCTGCTGCCCGGCCGCCGGCCCGCGGGCCCCGGGTCCCCCGCGACGTCCCCGCCGGCCTCGGTCCGCATC
CTGCGCGCTGCCGCTGCCTGCGACCTTCTCGGCTGCCTGGGTATGGTGATCCGGTCCACCGTGTGGTTAG
GATTCCCAAATTTTGTTGACAGCGTCTCGGATATGAACCACACGGAAATTTGGCCTGCTGCTTTCTGCGT
GGGGAGTGCGATGTGGATCCAGCTGTTGTACAGTGCCTGCTTCTGGTGGCTGTTTTGCTATGCAGTGGAT
GCTTATCTGGTGATCCGGAGATCGGCAGGACTGAGCACCATCCTGCTGTATCACATCATGGCGTGGGGCC
TGGCCACCCTGCTCTGTGTGGAGGGAGCCGCCATGCTCTACTACCCTTCCGTGTCCAGGTGTGAGCGGGG
CCTGGACCACGCCATCCCCCACTATGTCACCATGTACCTGCCCCTGCTGCTGGTTCTCGTGGCGAACCCC
ATCCTGTTCCAAAAGACAGTGACTGCAGTGGCCTCTTTACTTAAAGGAAGACAAGGCATTTACACGGAGA
ACGAGAGGAGGATGGGAGCCGTGATCAAGATCCGATTTTTCAAAATCATGCTGGTTTTAATTATTTGTTG
GTTGTCGAATATCATCAATGAAAGCCTTTTATTCTATCTTGAGATGCAAACAGATATCAATGGAGGTTCT
TTGAAACCTGTCAGAACTGCAGCCAAGACCACATGGTTTATTATGGGAATCCTGAATCCAGCCCAGGGAT
TTCTCTTGTCTTTGGCCTTCTACGGCTGGACAGGATGCAGCCTGGGTTTTCAGTCTCCCAGGAAGGAGAT
CCAGTGGGAATCACTGACCACCTCGGCTGCTGAGGGGGCTCACCCATCCCCACTGATGCCCCATGAAAAC
CCTGCTTCCGGGAAGGTGTCTCAAGTGGGTGGGCAGACTTCTGACGAAGCCCTGAGCATGCTGTCTGAAG
GTTCTGATGCCAGCACAATTGAAATTCACACTGCAAGTGAATCCTGCAACAAAAATGAGGGTGACCCTGC
TCTCCCAACCCATGGAGACCTATGA

Translation (404 aa):
MASPRLGTFCCPTRDAATQLVLSFQPRAFHALCLGSGGLRLALGLLQLLPGRRPAGPGSPATSPPASVRI
LRAAAACDLLGCLGMVIRSTVWLGFPNFVDSVSDMNHTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVD
AYLVIRRSAGLSTILLYHIMAWGLATLLCVEGAAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANP
ILFQKTVTAVASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICWLSNIINESLLFYLEMQTDINGGS
LKPVRTAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGAHPSPLMPHEN
PASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPTHGDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH