CCDS Report for Consensus CDS

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Report for CCDS54080.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
54080.1	Public	Homo sapiens	17	PITPNM3	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54080.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000421306.7	ENSP00000407882.3		Accepted	alive
		NCBI	NM_001165966.2	NP_001159438.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001159438.1	938	Q9BZ71-3	938	100%	0	0

Chromosomal Locations for CCDS 54080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)

Genome Browser links:

Chromosome	Start	Stop
17	6455338	6455643
17	6457594	6457722
17	6461373	6461556
17	6463732	6463881
17	6464170	6464318
17	6464655	6464771
17	6468225	6468341
17	6470260	6470408
17	6471161	6471355
17	6472657	6472827
17	6474432	6474604
17	6477029	6477213
17	6477975	6478097
17	6478547	6478736
17	6483517	6483752
17	6484216	6484292
17	6503527	6503574
17	6537987	6538082
17	6556385	6556406

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2817 nt):
ATGGCCAAGGCGGGCCGTGCAGGTGGTCCTCCCCCGGGCGGCGGTGCCCCCTGGCACCTTCGAAATGTCC TCAGTGACTCTGTGGAGAGCTCAGATGATGAATTCTTTGATGCCAGAGGAGAAGGGACCGCGCCGTGCAC ATCCAGCATCCTCCAGGAGAAGCAGCGAGAACTGTACCGGGTTTCCTTGAGAAGACAGAGGTTCCCAGCC CAGGGAAGCATCGAGATCCACGAAGACAGCGAGGAAGGCTGCCCGCAGCGCTCCTGCAAGACACATGTCC TCCTGCTGGTCCTGCATGGGGGAAACATCCTGGACACGGGTGCCGGGGACCCGTCCTGCAAGGCAGCCGA CATCCACACCTTCAGCTCCGTGCTGGAGAAGGTCACACGAGCCCATTTCCCTGCTGCCCTGGGCCACATC CTCATCAAGTTCGTCCCCTGTCCTGCCATCTGCTCTGAGGCTTTCTCGCTTGTCTCTCACCTGAACCCCT ACAGCCACGATGAGGGCTGCCTCAGCAGCAGCCAGGACCACGTCCCTCTGGCCGCCCTTCCCCTGTTGGC CATCTCCTCCCCGCAGTACCAGGATGCTGTCGCCACCGTCATCGAGCGAGCCAACCAGGTCTACAGAGAG TTCCTGAAGTCCTCTGATGGGATTGGCTTCAGTGGGCAGGTGTGTCTCATCGGGGACTGTGTGGGGGGCC TCCTGGCCTTCGATGCCATCTGCTACAGTGCGGGGCCCTCAGGGGACAGCCCTGCCAGCAGCAGCCGGAA GGGGAGCATCAGCAGCACCCAGGACACCCCAGTCGCGGTGGAGGAAGATTGCAGCCTGGCCAGCAGCAAG CGTCTCAGCAAAAGCAACATTGACATCTCCAGTGGGTTGGAGGATGAGGAGCCCAAGAGGCCGTTGCCGC GGAAACAGAGCGACTCCTCCACCTATGACTGCGAGGCCATCACCCAGCACCATGCCTTCCTCTCAAGCAT CCACTCCAGCGTGCTAAAGGATGAGTCTGAGACCCCGGCGGCTGGGGGGCCGCAGCTCCCTGAGGTCAGC CTGGGCCGCTTTGACTTCGATGTGTCCGACTTCTTCCTCTTCGGCTCGCCACTGGGCCTGGTCCTGGCCA TGCGGAGGACGGTGCTGCCTGGGCTGGACGGCTTCCAGGTGCGTCCTGCCTGCAGCCAGGTCTACAGCTT CTTCCATTGCGCAGACCCCTCTGCCTCACGGCTCGAGCCACTGCTGGAGCCCAAGTTCCACCTGGTGCCG CCTGTCAGCGTGCCTCGCTACCAGAGGTTCCCACTGGGCGATGGGCAGTCCCTCCTCCTCGCTGATGCCC TACACACCCACAGCCCCCTCTTCCTGGAGGGCAGCTCCCGGGACAGCCCGCCACTTCTGGATGCCCCTGC CTCGCCCCCTCAGGCCTCGAGGTTCCAGCGCCCAGGACGGAGGATGAGCGAGGGGAGCTCCCACAGCGAG AGCTCGGAGTCCTCGGACAGCATGGCACCCGTGGGTGCCTCCCGCATCACAGCCAAGTGGTGGGGAAGCA AGAGGATCGACTATGCCCTGTACTGCCCTGATGTCCTCACGGCCTTCCCCACCGTGGCCCTGCCCCACCT CTTCCACGCCAGTTACTGGGAGTCCACAGACGTGGTGGCCTTCATCCTGAGACAGGTAATGCGCTATGAG AGCGTGAACATCAAGGAAAGCGCCCGCCTGGACCCTGCAGCACTGAGTCCTGCCAACCCCCGGGAGAAGT GGCTTCGTAAGCGGACTCAGGTCAAGCTGAGGAATGTCACGGCTAATCACCGGGCCAATGATGTGATTGC TGCTGAAGATGGCCCCCAGGTCCTGGTGGGGCGGTTCATGTACGGGCCCCTCGACATGGTGGCTCTGACT GGAGAGAAGGTGGACATCCTAGTAATGGCAGAGCCATCCTCAGGCCGCTGGGTACACCTGGACACAGAGA TCACCAACAGCAGTGGTCGCATCACATACAATGTGCCGCGGCCCCGGCGCCTGGGGGTTGGTGTCTATCC TGTGAAGATGGTCGTCAGGGGCGACCAGACCTGTGCCATGAGCTACCTCACGGTGTTGCCCAGGGGCATG GAGTGTGTAGTGTTCAGCATTGATGGGTCCTTCGCGGCCAGCGTGTCTATCATGGGAAGCGACCCCAAGG TCCGGCCGGGTGCAGTGGATGTTGTCCGGCACTGGCAGGACTTGGGCTACATGATCCTTTACATCACGGG ACGGCCGGACATGCAGAAGCAGCGGGTGGTGTCGTGGCTGTCCCAGCACAACTTCCCACAGGGCATGATC TTCTTCTCCGATGGGCTGGTGCATGACCCGCTGCGGCAGAAGGCCATCTTCCTGCGCAACCTCATGCAGG AGTGCTTCATCAAAATCAGTGCGGCCTATGGCTCCACGAAGGACATCTCTGTCTACAGCGTGCTGGGCCT GCCTGCCTCCCAGATCTTCATTGTGGGCCGGCCCACCAAGAAGTACCAAACCCAGTGCCAGTTCCTGAGC GAGGGCTACGCCGCACACCTGGCCGCGCTGGAGGCCAGCCACCGCTCACGCCCAAAGAAGAACAACTCGC GCATGATCCTGCGCAAGGGCAGCTTCGGGCTGCACGCGCAGCCAGAGTTCCTGCGGAAGCGCAACCACCT GCGCAGAACCATGTCAGTGCAGCAGCCCGACCCGCCCGCCGCCAACCCCAAGCCCGAGCGGGCCCAGAGC CAGCCCGAGTCGGACAAAGACCACGAGCGGCCGCTGCCGGCGCTCAGCTGGGCGCGTGGGCCCCCCAAGT TCGAGTCGGTGCCCTGA
Translation (938 aa):
MAKAGRAGGPPPGGGAPWHLRNVLSDSVESSDDEFFDARGEGTAPCTSSILQEKQRELYRVSLRRQRFPA QGSIEIHEDSEEGCPQRSCKTHVLLLVLHGGNILDTGAGDPSCKAADIHTFSSVLEKVTRAHFPAALGHI LIKFVPCPAICSEAFSLVSHLNPYSHDEGCLSSSQDHVPLAALPLLAISSPQYQDAVATVIERANQVYRE FLKSSDGIGFSGQVCLIGDCVGGLLAFDAICYSAGPSGDSPASSSRKGSISSTQDTPVAVEEDCSLASSK RLSKSNIDISSGLEDEEPKRPLPRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDESETPAAGGPQLPEVS LGRFDFDVSDFFLFGSPLGLVLAMRRTVLPGLDGFQVRPACSQVYSFFHCADPSASRLEPLLEPKFHLVP PVSVPRYQRFPLGDGQSLLLADALHTHSPLFLEGSSRDSPPLLDAPASPPQASRFQRPGRRMSEGSSHSE SSESSDSMAPVGASRITAKWWGSKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYE SVNIKESARLDPAALSPANPREKWLRKRTQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALT GEKVDILVMAEPSSGRWVHLDTEITNSSGRITYNVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGM ECVVFSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMI FFSDGLVHDPLRQKAIFLRNLMQECFIKISAAYGSTKDISVYSVLGLPASQIFIVGRPTKKYQTQCQFLS EGYAAHLAALEASHRSRPKKNNSRMILRKGSFGLHAQPEFLRKRNHLRRTMSVQQPDPPAANPKPERAQS QPESDKDHERPLPALSWARGPPKFESVP

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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