NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9410.1 Public Homo sapiens 13 LPAR6 24 110 108 CCDS HistoryNCBI Gene:10161Re-query CCDS DB by CCDS ID:9410.1Re-query CCDS DB by GeneID:10161See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345941.2 ENSP00000344353.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345941.2Link to Ensembl Protein Viewer:ENSP00000344353.2Re-query CCDS DB by Nucleotide ID:ENST00000345941Re-query CCDS DB by Protein ID:ENSP00000344353
Original member Current member EBI ENST00000378434.8 ENSP00000367691.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378434.8Link to Ensembl Protein Viewer:ENSP00000367691.3Re-query CCDS DB by Nucleotide ID:ENST00000378434Re-query CCDS DB by Protein ID:ENSP00000367691
Original member Current member EBI ENST00000620633.5 ENSP00000482660.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620633.5Link to Ensembl Protein Viewer:ENSP00000482660.1Re-query CCDS DB by Nucleotide ID:ENST00000620633Re-query CCDS DB by Protein ID:ENSP00000482660
Original member Current member NCBI NM_001162497.3 NP_001155969.1 Accepted alive Link to Nucleotide Sequence:NM_001162497.3Link to Protein Sequence:NP_001155969.1Re-query CCDS DB by Nucleotide ID:NM_001162497Re-query CCDS DB by Protein ID:NP_001155969Link to BLAST:NP_001155969.1
Original member Current member NCBI NM_001162498.3 NP_001155970.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001162498.3Link to Protein Sequence:NP_001155970.1Re-query CCDS DB by Nucleotide ID:NM_001162498Re-query CCDS DB by Protein ID:NP_001155970Link to BLAST:NP_001155970.1
Original member Current member NCBI NM_001377316.2 NP_001364245.1 Accepted alive Link to Nucleotide Sequence:NM_001377316.2Link to Protein Sequence:NP_001364245.1Re-query CCDS DB by Nucleotide ID:NM_001377316Re-query CCDS DB by Protein ID:NP_001364245Link to BLAST:NP_001364245.1
Original member Current member NCBI NM_001377317.2 NP_001364246.1 Accepted alive Link to Nucleotide Sequence:NM_001377317.2Link to Protein Sequence:NP_001364246.1Re-query CCDS DB by Nucleotide ID:NM_001377317Re-query CCDS DB by Protein ID:NP_001364246Link to BLAST:NP_001364246.1
Original member Current member NCBI NM_005767.7 NP_005758.2 Accepted alive Link to Nucleotide Sequence:NM_005767.7Link to Protein Sequence:NP_005758.2Re-query CCDS DB by Nucleotide ID:NM_005767Re-query CCDS DB by Protein ID:NP_005758Link to BLAST:NP_005758.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155969.1 344 P43657 344 100% 0 0
NP_001155970.1 344 P43657 344 100% 0 0
NP_001364245.1 344 P43657 344 100% 0 0
NP_001364246.1 344 P43657 344 100% 0 0
NP_005758.2 344 P43657 344 100% 0 0

Chromosomal Locations for CCDS 9410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48411389 48412423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGTAAGCGTTAACAGCTCCCACTGCTTCTATAATGACTCCTTTAAGTACACTTTGTATGGGTGCATGT
TCAGCATGGTGTTTGTGCTTGGGTTAATATCCAATTGTGTTGCCATATACATTTTCATCTGCGTCCTCAA
AGTCCGAAATGAAACTACAACTTACATGATTAACTTGGCAATGTCAGACTTGCTTTTTGTTTTTACTTTA
CCCTTCAGGATTTTTTACTTCACAACACGGAATTGGCCATTTGGAGATTTACTTTGTAAGATTTCTGTGA
TGCTGTTTTATACCAACATGTACGGAAGCATTCTGTTCTTAACCTGTATTAGTGTAGATCGATTTCTGGC
AATTGTCTACCCATTTAAGTCAAAGACTCTAAGAACCAAAAGAAATGCAAAGATTGTTTGCACTGGCGTG
TGGTTAACTGTGATCGGAGGAAGTGCACCCGCCGTTTTTGTTCAGTCTACCCACTCTCAGGGTAACAATG
CCTCAGAAGCCTGCTTTGAAAATTTTCCAGAAGCCACATGGAAAACATATCTCTCAAGGATTGTAATTTT
CATCGAAATAGTGGGATTTTTTATTCCTCTAATTTTAAATGTAACTTGTTCTAGTATGGTGCTAAAAACT
TTAACCAAACCTGTTACATTAAGTAGAAGCAAAATAAACAAAACTAAGGTTTTAAAAATGATTTTTGTAC
ATTTGATCATATTCTGTTTCTGTTTTGTTCCTTACAATATCAATCTTATTTTATATTCTCTTGTGAGAAC
ACAAACATTTGTTAATTGCTCAGTAGTGGCAGCAGTAAGGACAATGTACCCAATCACTCTCTGTATTGCT
GTTTCCAACTGTTGTTTTGACCCTATAGTTTACTACTTTACATCGGACACAATTCAGAATTCAATAAAAA
TGAAAAACTGGTCTGTCAGGAGAAGTGACTTCAGATTCTCTGAAGTTCATGGTGCAGAGAATTTTATTCA
GCATAACCTACAGACCTTAAAAAGTAAGATATTTGACAATGAATCTGCTGCCTGA

Translation (344 aa):
MVSVNSSHCFYNDSFKYTLYGCMFSMVFVLGLISNCVAIYIFICVLKVRNETTTYMINLAMSDLLFVFTL
PFRIFYFTTRNWPFGDLLCKISVMLFYTNMYGSILFLTCISVDRFLAIVYPFKSKTLRTKRNAKIVCTGV
WLTVIGGSAPAVFVQSTHSQGNNASEACFENFPEATWKTYLSRIVIFIEIVGFFIPLILNVTCSSMVLKT
LTKPVTLSRSKINKTKVLKMIFVHLIIFCFCFVPYNINLILYSLVRTQTFVNCSVVAAVRTMYPITLCIA
VSNCCFDPIVYYFTSDTIQNSIKMKNWSVRRSDFRFSEVHGAENFIQHNLQTLKSKIFDNESAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH