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Report for CCDS9850.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9850.2 Public Homo sapiens 14 ESRRB 24 110 108 CCDS HistoryNCBI Gene:2103Re-query CCDS DB by CCDS ID:9850.2Re-query CCDS DB by GeneID:2103See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9850.1
The coding region has been updated to represent an alternative transcript variant that is more likely to be protein-coding. The previous representation was a candidate for nonsense-mediated mRNA decay (NMD).

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9850.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380887.7 ENSP00000370270.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380887.7Link to Ensembl Protein Viewer:ENSP00000370270.2Re-query CCDS DB by Nucleotide ID:ENST00000380887Re-query CCDS DB by Protein ID:ENSP00000370270
Original member Current member EBI ENST00000509242.5 ENSP00000422488.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509242.5Link to Ensembl Protein Viewer:ENSP00000422488.1Re-query CCDS DB by Nucleotide ID:ENST00000509242Re-query CCDS DB by Protein ID:ENSP00000422488
Original member Current member NCBI NM_004452.4 NP_004443.3 Accepted alive Link to Nucleotide Sequence:NM_004452.4Link to Protein Sequence:NP_004443.3Re-query CCDS DB by Nucleotide ID:NM_004452Re-query CCDS DB by Protein ID:NP_004443Link to BLAST:NP_004443.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004443.3 508 O95718-1 508 100% 0 0

Chromosomal Locations for CCDS 9850.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 76439354 76439750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76462545 76462661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76482016 76482126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76482598 76482759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76491447 76491716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76498214 76498452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76499863 76500066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76500695 76500721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGTCCTCGGACGACAGGCACCTGGGCTCCAGCTGCGGCTCCTTCATCAAGACTGAGCCGTCCAGCCCGT
CCTCGGGCATCGATGCCCTCAGCCACCACAGCCCCAGTGGCTCGTCCGACGCCAGCGGCGGCTTTGGCCT
GGCCCTGGGCACCCACGCCAACGGTCTGGACTCGCCACCCATGTTTGCAGGCGCCGGGCTGGGAGGCACC
CCATGCCGCAAGAGCTACGAGGACTGTGCCAGCGGCATCATGGAGGACTCGGCCATCAAGTGCGAGTACA
TGCTCAACGCCATCCCCAAGCGCCTGTGCCTCGTGTGCGGGGACATTGCCTCTGGCTACCACTACGGCGT
GGCCTCCTGCGAGGCTTGCAAGGCCTTCTTCAAGAGGACTATCCAAGGGAACATTGAGTACAGCTGCCCG
GCCACCAACGAGTGCGAGATCACCAAACGGAGGCGCAAGTCCTGCCAGGCCTGCCGCTTCATGAAATGCC
TCAAAGTGGGGATGCTGAAGGAAGGTGTGCGCCTTGATCGAGTGCGTGGAGGCCGTCAGAAATACAAGCG
ACGGCTGGACTCAGAGAGCAGCCCATACCTGAGCTTACAAATTTCTCCACCTGCTAAAAAGCCATTGACC
AAGATTGTCTCATACCTACTGGTGGCTGAGCCGGACAAGCTCTATGCCATGCCTCCCCCTGGTATGCCTG
AGGGGGACATCAAGGCCCTGACCACTCTCTGTGACCTGGCAGACCGAGAGCTTGTGGTCATCATTGGCTG
GGCCAAGCACATCCCAGGCTTCTCAAGCCTCTCCCTGGGGGACCAGATGAGCCTGCTGCAGAGTGCCTGG
ATGGAAATCCTCATCCTGGGCATCGTGTACCGCTCGCTGCCCTATGACGACAAGCTGGTGTACGCTGAGG
ACTACATCATGGATGAGGAGCACTCCCGCCTCGCGGGGCTGCTGGAGCTCTACCGGGCCATCCTGCAGCT
GGTACGCAGGTACAAGAAGCTCAAGGTGGAGAAGGAGGAGTTTGTGACGCTCAAGGCCCTGGCCCTCGCC
AACTCCGATTCCATGTACATCGAGGATCTAGAGGCTGTCCAGAAGCTGCAGGACCTGCTGCACGAGGCAC
TGCAGGACTACGAGCTGAGCCAGCGCCATGAGGAGCCCTGGAGGACGGGCAAGCTGCTGCTGACACTGCC
GCTGCTGCGGCAGACGGCCGCCAAGGCCGTGCAGCACTTCTATAGCGTCAAACTGCAGGGCAAAGTGCCC
ATGCACAAACTCTTCCTGGAGATGCTGGAGGCCAAGGTTGGCCAAGAGCAGCTTAGAGGATCTCCCAAGG
ATGAAAGAATGTCAAGCCATGATGGAAAATGCCCCTTCCAATCAGCTGCCTTCACAAGCAGGGATCAGAG
CAACTCCCCGGGGATCCCCAATCCACGCCCTTCTAGTCCAACCCCCCTCAATGAGAGAGGCAGGCAGATC
TCACCCAGCACTAGGACACCAGGAGGCCAGGGAAAGCATCTCTGGCTCACCATGTAA

Translation (508 aa):
MSSDDRHLGSSCGSFIKTEPSSPSSGIDALSHHSPSGSSDASGGFGLALGTHANGLDSPPMFAGAGLGGT
PCRKSYEDCASGIMEDSAIKCEYMLNAIPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCP
ATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSESSPYLSLQISPPAKKPLT
KIVSYLLVAEPDKLYAMPPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAW
MEILILGIVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKALALA
NSDSMYIEDLEAVQKLQDLLHEALQDYELSQRHEEPWRTGKLLLTLPLLRQTAAKAVQHFYSVKLQGKVP
MHKLFLEMLEAKVGQEQLRGSPKDERMSSHDGKCPFQSAAFTSRDQSNSPGIPNPRPSSPTPLNERGRQI
SPSTRTPGGQGKHLWLTM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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