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Report for CCDS6632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6632.1 Public Homo sapiens 9 SMC5 24 110 108 CCDS HistoryNCBI Gene:23137Re-query CCDS DB by CCDS ID:6632.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6632.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361138.7 ENSP00000354957.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361138.7Link to Ensembl Protein Viewer:ENSP00000354957.5Re-query CCDS DB by Nucleotide ID:ENST00000361138Re-query CCDS DB by Protein ID:ENSP00000354957
Original member Current member NCBI NM_015110.4 NP_055925.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015110.4Link to Protein Sequence:NP_055925.2Re-query CCDS DB by Nucleotide ID:NM_015110Re-query CCDS DB by Protein ID:NP_055925Link to BLAST:NP_055925.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055925.2 1101 Q8IY18 1101 100% 0 0

Chromosomal Locations for CCDS 6632.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 70259079 70259263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70264304 70264445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70267923 70267975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70277310 70277472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70278491 70278625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70280759 70280899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70282422 70282583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70286200 70286271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70297966 70298221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70300046 70300200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70305247 70305360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70314742 70314836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70315446 70315578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70318514 70318687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70318794 70318963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70323483 70323606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70324021 70324143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70344144 70344269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70346605 70346649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70347066 70347161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70347613 70347717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70347919 70348038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70350114 70350293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70350376 70350471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70352191 70352331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3306 nt):
ATGGCGACTCCGAGCAAGAAGACGTCAACTCCAAGCCCCCAGCCTTCCAAGAGAGCTCTCCCGAGAGACC
CTTCGTCGGAGGTCCCGAGCAAGAGGAAGAATTCGGCCCCGCAGCTGCCGCTGTTGCAGTCGTCCGGGCC
TTTCGTGGAAGGCTCTATCGTCCGCATCTCGATGGAGAACTTCCTAACATATGATATTTGTGAAGTATCT
CCTGGACCCCACTTGAATATGATCGTTGGAGCCAATGGAACAGGGAAGTCGAGCATTGTGTGTGCCATTT
GCCTTGGTTTAGCTGGAAAACCTGCTTTCATGGGACGAGCAGATAAGGTTGGGTTTTTTGTGAAGAGAGG
ATGTTCTAGAGGCATGGTTGAAATTGAATTGTTCAGGGCTTCTGGAAATCTTGTAATCACCCGTGAGATT
GATGTGGCAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAATCTACAACCCAGAAAATAGTGGAAGAGA
AAGTTGCAGCCTTAAATATTCAAGTGGGGAATCTTTGCCAGTTTCTCCCTCAGGACAAAGTTGGAGAATT
TGCTAAACTCAGCAAAATTGAACTCCTCGAAGCCACTGAAAAGTCAATTGGTCCCCCAGAAATGCACAAA
TATCACTGTGAACTCAAAAACTTAAGGGAGAAAGAAAAACAGCTCGAGACCTCATGCAAAGAGAAAACTG
AGTATCTACAGAAAATGGTTCAGAGGAATGAAAGATATAAACAAGATGTGGAGAGGTTCTATGAACGGAA
GCGACATTTAGATTTAATTGAGATGCTTGAAGCAAAAAGGCCATGGGTGGAATATGAAAATGTTCGTCAG
GAATATGAAGAAGTAAAACTAGTTCGTGACCGAGTGAAGGAAGAGGTCAGAAAACTTAAAGAAGGGCAGA
TTCCTGTAACATGTCGAATTGAAGAAATGGAAAACGAGCGTCACAATTTGGAGGCTCGAATCAAAGAAAA
GGCAACAGATATTAAGGAGGCATCTCAAAAATGCAAACAGAAGCAAGATGTTATAGAAAGGAAAGATAAA
CATATTGAGGAACTTCAGCAGGCTTTAATAGTAAAGCAAAATGAAGAGCTTGACCGACAGAGGAGAATAG
GTAATACCCGCAAAATGATAGAGGATTTGCAAAATGAACTAAAGACCACGGAAAACTGCGAGAATCTTCA
GCCCCAGATTGATGCCATTACAAATGATCTGAGACGGATTCAGGATGAAAAGGCATTATGTGAAGGCGAA
ATAATTGATAAGCGAAGAGAGAGGGAAACTCTAGAGAAGGAGAAAAAGAGTGTGGACGATCATATTGTAC
GTTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTAAGACAGAGATTCCGTGACACGTATGATGCTGT
TTTATGGCTAAGAAATAACAGAGACAAATTTAAACAAAGAGTCTGTGAGCCCATAATGCTCACGATCAAT
ATGAAAGATAATAAAAATGCCAAATATATTGAAAATCATATTCCATCAAATGACTTAAGAGCCTTTGTAT
TTGAAAGTCAAGAAGATATGGAGGTTTTCCTCAAAGAGGTTCGTGACAATAAAAAATTAAGAGTAAATGC
TGTTATTGCTCCCAAGAGTTCATATGCAGACAAAGCACCTTCAAGATCTTTGAATGAACTTAAACAATAC
GGATTTTTCTCTTATTTGAGAGAATTATTTGATGCACCTGATCCTGTAATGAGTTACCTTTGCTGTCAGT
ATCATATTCATGAAGTTCCTGTAGGAACTGAAAAGACCAGAGAAAGAATTGAACGGGTAATACAAGAAAC
CCGATTAAAACAGATTTATACAGCAGAAGAAAAGTATGTGGTGAAAACTTCTTTTTATTCAAACAAAGTT
ATTTCTAGTAACACATCTCTAAAAGTAGCGCAGTTTCTCACTGTCACTGTGGACCTAGAGCAGAGAAGAC
ACTTAGAAGAACAGCTAAAGGAAATTCATAGAAAATTGCAAGCAGTGGATTCAGGGTTGATTGCCTTACG
TGAAACAAGCAAACATCTGGAGCACAAAGACAATGAACTTAGACAAAAGAAGAAGGAGCTTCTTGAGAGA
AAAACCAAGAAAAGACAACTGGAACAAAAAATCAGTTCCAAACTAGGAAGTTTAAAGCTGATGGAACAGG
ATACTTGCAATCTTGAAGAGGAAGAGCGAAAAGCAAGTACCAAAATCAAAGAAATAAATGTTCAAAAAGC
GAAACTTGTTACCGAATTAACAAACCTAATAAAGATTTGTACTTCTTTGCATATACAAAAAGTAGATTTA
ATTCTCCAAAATACTACAGTGATCTCTGAGAAGAACAAATTAGAATCAGATTATATGGCCGCATCTTCAC
AACTCCGTCTTACAGAGCAACATTTCATTGAATTGGATGAAAATAGACAGAGATTATTGCAGAAATGCAA
GGAACTTATGAAAAGAGCTAGGCAAGTATGTAACCTGGGTGCAGAGCAGACTCTTCCTCAAGAATACCAG
ACACAAGTACCCACCATTCCAAATGGACACAACTCCTCACTCCCCATGGTTTTCCAAGACCTTCCAAACA
CATTGGATGAAATTGATGCTTTATTAACTGAAGAAAGATCAAGAGCTTCCTGCTTCACGGGACTGAATCC
TACAATTGTTCAGGAATATACAAAAAGAGAAGAAGAAATAGAACAGTTAACTGAGGAACTAAAGGGAAAG
AAAGTTGAACTAGATCAATACAGGGAAAACATTTCACAGGTAAAAGAAAGGTGGCTTAATCCTTTAAAAG
AGCTGGTAGAAAAAATTAATGAAAAATTCAGCAATTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGA
TCTCCATACAGAAAATGAGGAAGATTATGATAAATATGGAATTCGAATTAGAGTCAAATTTCGAAGTAGT
ACTCAACTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACCATGTTATACT
TGATGGCACTTCAGGAGCTAAATAGATGTCCATTCAGAGTAGTTGATGAAATCAATCAGGGAATGGACCC
AATCAATGAACGGAGAGTGTTTGAAATGGTTGTAAATACTGCCTGTAAAGAAAATACATCTCAATACTTT
TTCATAACACCAAAGCTCCTGCAAAATCTTCCTTATTCTGAAAAGATGACAGTTTTGTTTGTCTACAATG
GCCCTCATATGCTGGAACCAAACACATGGAATTTAAAGGCTTTCCAAAGGCGGCGGCGCCGTATTACATT
CACTCAACCTTCTTAA

Translation (1101 aa):
MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMENFLTYDICEVS
PGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSRGMVEIELFRASGNLVITREI
DVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHK
YHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQ
EYEEVKLVRDRVKEEVRKLKEGQIPVTCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDK
HIEELQQALIVKQNEELDRQRRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGE
IIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQRVCEPIMLTIN
MKDNKNAKYIENHIPSNDLRAFVFESQEDMEVFLKEVRDNKKLRVNAVIAPKSSYADKAPSRSLNELKQY
GFFSYLRELFDAPDPVMSYLCCQYHIHEVPVGTEKTRERIERVIQETRLKQIYTAEEKYVVKTSFYSNKV
ISSNTSLKVAQFLTVTVDLEQRRHLEEQLKEIHRKLQAVDSGLIALRETSKHLEHKDNELRQKKKELLER
KTKKRQLEQKISSKLGSLKLMEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSLHIQKVDL
ILQNTTVISEKNKLESDYMAASSQLRLTEQHFIELDENRQRLLQKCKELMKRARQVCNLGAEQTLPQEYQ
TQVPTIPNGHNSSLPMVFQDLPNTLDEIDALLTEERSRASCFTGLNPTIVQEYTKREEEIEQLTEELKGK
KVELDQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHTENEEDYDKYGIRIRVKFRSS
TQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPINERRVFEMVVNTACKENTSQYF
FITPKLLQNLPYSEKMTVLFVYNGPHMLEPNTWNLKAFQRRRRRITFTQPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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