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Report for CCDS3366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3366.1 Public Homo sapiens 4 RGS12 24 110 108 CCDS HistoryNCBI Gene:6002Re-query CCDS DB by CCDS ID:3366.1Re-query CCDS DB by GeneID:6002See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3366.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336727.8 ENSP00000338509.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336727.8Link to Ensembl Protein Viewer:ENSP00000338509.4Re-query CCDS DB by Nucleotide ID:ENST00000336727Re-query CCDS DB by Protein ID:ENSP00000338509
Original member Current member EBI ENST00000344733.9 ENSP00000339381.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344733.9Link to Ensembl Protein Viewer:ENSP00000339381.5Re-query CCDS DB by Nucleotide ID:ENST00000344733Re-query CCDS DB by Protein ID:ENSP00000339381
Original member Current member NCBI NM_001394154.1 NP_001381083.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394154.1Link to Protein Sequence:NP_001381083.1Re-query CCDS DB by Nucleotide ID:NM_001394154Re-query CCDS DB by Protein ID:NP_001381083Link to BLAST:NP_001381083.1
Original member Current member NCBI NM_001394155.1 NP_001381084.1 Accepted alive Link to Nucleotide Sequence:NM_001394155.1Link to Protein Sequence:NP_001381084.1Re-query CCDS DB by Nucleotide ID:NM_001394155Re-query CCDS DB by Protein ID:NP_001381084Link to BLAST:NP_001381084.1
Original member Current member NCBI NM_198229.3 NP_937872.1 Accepted alive Link to Nucleotide Sequence:NM_198229.3Link to Protein Sequence:NP_937872.1Re-query CCDS DB by Nucleotide ID:NM_198229Re-query CCDS DB by Protein ID:NP_937872Link to BLAST:NP_937872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381083.1 1447 O14924-1 1447 100% 0 0
NP_001381084.1 1447 O14924-1 1447 100% 0 0
NP_937872.1 1447 O14924-1 1447 100% 0 0

Chromosomal Locations for CCDS 3366.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3316171 3318051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3342937 3343053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3386416 3386437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3414072 3414241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3414752 3414844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3415978 3416121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3416913 3417092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3417388 3417541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3420642 3420718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3422376 3422570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3422905 3422978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3423515 3423641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3425464 3425560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3428090 3428169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3428558 3428711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3430407 3430955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3439455 3439684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4344 nt):
ATGTTTAGAGCTGGGGAGGCCTCCAAACGCCCATTGCCTGGGCCGTCGCCCCCAAGGGTGCGGAGTGTGG
AGGTTGCCCGGGGGAGGGCCGGCTACGGATTCACGCTTTCGGGACAGGCACCCTGTGTGCTCAGCTGCGT
CATGAGAGGGAGCCCTGCGGATTTCGTGGGCCTCCGAGCTGGAGACCAGATACTTGCTGTCAATGAAATC
AACGTGAAAAAAGCATCTCATGAAGATGTAGTGAAATTAATTGGGAAGTGCTCTGGTGTCCTTCACATGG
TGATTGCTGAAGGCGTCGGCCGCTTCGAATCCTGTTCCAGTGATGAAGAAGGGGGACTCTATGAAGGAAA
AGGCTGGCTGAAGCCCAAGCTGGATTCTAAAGCACTAGGTATAAACAGAGCAGAGCGAGTCGTGGAGGAA
ATGCAGTCTGGTGGAATTTTCAATATGATTTTTGAAAACCCGAGCCTTTGTGCGAGCAATTCAGAGCCCT
TGAAATTGAAACAAAGATCCCTTTCAGAGTCGGCCGCAACTCGATTTGATGTTGGACATGAAAGTATAAA
TAATCCAAATCCCAACATGCTTTCTAAGGAGGAAATATCAAAAGTTATTCATGATGATTCGGTTTTCAGC
ATTGGACTAGAAAGTCATGACGATTTTGCATTGGATGCAAGTATTTTAAACGTGGCGATGATCGTGGGCT
ACTTAGGCTCCATTGAGCTTCCTTCCACGAGCTCCAACCTGGAGTCCGACAGCTTGCAAGCCATCCGCGG
CTGCATGCGGCGCCTGCGGGCAGAGCAGAAAATCCACTCGCTGGTGACCATGAAGATCATGCACGACTGT
GTGCAGCTGAGCACTGACAAGGCTGGAGTCGTGGCCGAGTACCCGGCCGAGAAGCTGGCCTTCAGCGCCG
TGTGCCCGGACGACCGGCGATTTTTCGGGTTGGTTACCATGCAGACGAATGACGACGGGAGCCTGGCCCA
GGAGGAGGAGGGCGCCCTGCGGACTTCCTGCCACGTGTTCATGGTGGACCCAGACTTGTTTAATCACAAG
ATCCACCAAGGCATTGCTCGGCGGTTTGGGTTTGAGTGCACGGCCGACCCAGACACCAATGGCTGTCTGG
AATTCCCGGCGTCCTCCCTCCCCGTCCTGCAGTTCATCTCTGTCCTGTACCGAGACATGGGTGAGCTGAT
TGAGGGCATGCGGGCCCGCGCCTTTCTGGACGGGGACGCCGATGCCCACCAGAACAACAGCACCAGCAGC
AACAGTGACAGCGGCATTGGGAACTTCCACCAGGAGGAGAAGAGCAACCGGGTCCTTGTGGTGGACCTGG
GTGGGAGCTCGAGCAGACACGGCCCCGGAGGCAGCGCGTGGGACGGTGTGGGTGGGAGGGGTGCCCAGCC
CTGGGGTGCTCCCTGGACTGGGCCCTTCTGTCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCAT
CAGACTGACAGGTTCTGGGACCTAAACAAGCACCTAGGGCCAGCCTCTCCTGTGGAGGTGCCCCCAGCTT
CCTTGAGGAGCTCAGTCCCCCCTTCCAAGAGGGGCACCGTGGGTGCTGGCTGTGGTTTCAACCAGCGCTG
GCTCCCGGTCCACGTGCTCCGGGAGTGGCAGTGCGGACACACCAGCGACCAGGACTCTTACACAGATTCC
ACCGATGGCTGGTCCAGCATCAACTGCGGCACACTGCCCCCTCCTATGAGCAAGATCCCCGCAGACCGCT
ACAGGGTGGAGGGCAGCTTCGCGCAGCCCCCGCTGAATGCCCCGAAGAGGGAGTGGTCCAGGAAGGCCTT
TGGAATGCAAAGCATTTTTGGTCCCCATCGAAATGTTCGAAAGACTAAGGAAGATAAAAAGGGCTCAAAA
TTTGGGCGGGGAACTGGACTCACTCAGCCTTCTCAACGCACGTCTGCTCGGAGATCATTTGGGAGATCCA
AGAGATTCAGTATCACTCGCTCCCTTGATGATCTTGAGTCTGCAACTGTGTCTGATGGCGAGTTGACGGG
CGCCGACCTGAAGGACTGCGTCAGCAACAACAGCCTGAGCAGCAATGCCAGCCTCCCCAGCGTGCAGAGC
TGCCGGCGCCTGCGTGAGAGGAGGGTCGCCAGCTGGGCCGTGTCCTTTGAGCGCCTGCTGCAGGACCCCG
TCGGTGTCCGCTACTTCTCTGATTTTCTAAGGAAAGAATTCAGTGAAGAAAACATTTTATTCTGGCAGGC
CTGTGAATATTTTAATCATGTTCCTGCACATGACAAAAAGGAGCTTTCCTACAGGGCCCGGGAGATTTTC
AGTAAGTTTCTCTGCAGCAAAGCCACCACCCCGGTCAACATCGACAGCCAGGCCCAGCTAGCAGACGACG
TCCTCCGCGCACCTCACCCAGACATGTTCAAGGAGCAGCAGCTGCAGATCTTCAATCTCATGAAGTTTGA
TAGCTACACTCGCTTTCTGAAGTCCCCGCTGTACCAGGAATGCATCCTGGCGGAAGTGGAGGGCCGTGCA
CTCCCGGACTCGCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCGGTTCAGACCACTCCAGTG
TGTCCACGCCAAAAAAGTTAAGTGGAAAATCAAAATCCGGCCGATCCCTGAATGAAGAGCTGGGGGATGA
GGACAGCGAGAAGAAGCGGAAAGGCGCGTTTTTCTCGTGGTCGCGGACCAGGAGCACCGGGAGGTCCCAG
AAAAAGAGGGAGCACGGGGACCACGCAGACGACGCCCTGCATGCCAATGGAGGCCTGTGTCGCCGAGAGT
CGCAGGGCTCTGTGTCCTCTGCGGGGAGCCTGGACCTGTCGGAGGCCTGCAGGACTTTGGCACCCGAGAA
GGACAAGGCCACCAAGCACTGCTGCATTCATCTCCCGGATGGGACATCCTGCGTGGTGGCTGTCAAGGCG
GGCTTCTCCATCAAAGACATCCTGTCCGGACTCTGTGAGCGGCATGGCATCAACGGGGCGGCCGCGGACC
TCTTCCTGGTGGGCGGGGACAAGCCTCTGGTGCTGCACCAAGACAGTAGCATCTTGGAGTCAAGGGACCT
GCGCCTAGAAAAGCGCACCTTGTTTCGGCTGGATCTTGTTCCGATTAACCGGTCAGTGGGACTCAAGGCC
AAGCCCACCAAGCCCGTCACGGAGGTGCTGCGGCCCGTGGTGGCCAGATACGGCCTGGACCTCAGTGGCC
TGCTGGTGAGGCTGAGTGGAGAGAAGGAGCCCCTGGACCTTGGCGCCCCTATATCGAGTCTGGACGGACA
GCGGGTTGTCTTGGAGGAGAAGGATCCTTCCAGAGGAAAGGCATCCGCAGATAAACAGAAAGGTGTGCCA
GTGAAACAGAACACAGCTGTAAATTCCAGCTCCAGAAACCACTCGGCTACGGGAGAGGAAAGAACACTAG
GCAAGTCTAATTCTATTAAAATAAAAGGAGAAAATGGAAAAAATGCTAGGGATCCCCGGCTTTCAAAGAG
AGAAGAATCTATTGCAAAGATTGGGAAAAAAAAATATCAGAAAATTAATTTGGACGAAGCAGAGGAGTTT
TTTGAGCTTATTTCCAAAGCTCAGAGCAACAGAGCAGATGACCAACGTGGGCTGCTAAGGAAGGAAGACC
TGGTGTTGCCAGAGTTCCTCCGTTTACCTCCTGGTTCCACAGAACTCACCCTCCCCACTCCAGCTGCTGT
GGCCAAGGGCTTTAGCAAGAGAAGCGCCACAGGCAACGGCCGGGAGAGCGCCTCCCAGCCTGGCGAGCAG
TGGGAGCCAGTCCAGGAGAGCAGCGACAGCCCGTCCACCAGCCCGGGCTCAGCCTCCAGCCCCCCTGGAC
CTCCTGGGACGACCCCCCCCGGGCAGAAGTCTCCCAGCGGGCCCTTCTGCACTCCCCAGTCCCCCGTCTC
CCTCGCGCAGGAGGGCACCGCCCAGATCTGGAAGAGGCAGTCTCAGGAAGTGGAGGCCGGGGGCATCCAG
ACGGTGGAGGATGAGCACGTGGCCGAGCTGACCCTGATGGGGGAGGGGGACATCAGCAGCCCCAACAGCA
CCTTGCTGCCGCCGCCCTCCACCCCCCAGGAAGTGCCAGGACCTTCCAGACCAGGAAGTGGGACCCATGG
CAGCCGAGACCTCCCAGTCAACAGAATCATCGATGTGGATCTTGTAACTGGCTCGGCGCCCGGGCGGGAT
GGTGGCATAGCGGGGGCACAGGCTGGCCCTGGGAGGTCGCAGGCCAGTGGTGGGCCTCCTACATCAGACC
TCCCTGGCTTGGGCCCCGTCCCGGGTGAGCCTGCTAAGCCCAAGACCAGCGCTCACCACGCCACCTTCGT
CTGA

Translation (1447 aa):
MFRAGEASKRPLPGPSPPRVRSVEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEI
NVKKASHEDVVKLIGKCSGVLHMVIAEGVGRFESCSSDEEGGLYEGKGWLKPKLDSKALGINRAERVVEE
MQSGGIFNMIFENPSLCASNSEPLKLKQRSLSESAATRFDVGHESINNPNPNMLSKEEISKVIHDDSVFS
IGLESHDDFALDASILNVAMIVGYLGSIELPSTSSNLESDSLQAIRGCMRRLRAEQKIHSLVTMKIMHDC
VQLSTDKAGVVAEYPAEKLAFSAVCPDDRRFFGLVTMQTNDDGSLAQEEEGALRTSCHVFMVDPDLFNHK
IHQGIARRFGFECTADPDTNGCLEFPASSLPVLQFISVLYRDMGELIEGMRARAFLDGDADAHQNNSTSS
NSDSGIGNFHQEEKSNRVLVVDLGGSSSRHGPGGSAWDGVGGRGAQPWGAPWTGPFCPDPEGSPPFEAAH
QTDRFWDLNKHLGPASPVEVPPASLRSSVPPSKRGTVGAGCGFNQRWLPVHVLREWQCGHTSDQDSYTDS
TDGWSSINCGTLPPPMSKIPADRYRVEGSFAQPPLNAPKREWSRKAFGMQSIFGPHRNVRKTKEDKKGSK
FGRGTGLTQPSQRTSARRSFGRSKRFSITRSLDDLESATVSDGELTGADLKDCVSNNSLSSNASLPSVQS
CRRLRERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIF
SKFLCSKATTPVNIDSQAQLADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECILAEVEGRA
LPDSQQVPSSPASKHSLGSDHSSVSTPKKLSGKSKSGRSLNEELGDEDSEKKRKGAFFSWSRTRSTGRSQ
KKREHGDHADDALHANGGLCRRESQGSVSSAGSLDLSEACRTLAPEKDKATKHCCIHLPDGTSCVVAVKA
GFSIKDILSGLCERHGINGAAADLFLVGGDKPLVLHQDSSILESRDLRLEKRTLFRLDLVPINRSVGLKA
KPTKPVTEVLRPVVARYGLDLSGLLVRLSGEKEPLDLGAPISSLDGQRVVLEEKDPSRGKASADKQKGVP
VKQNTAVNSSSRNHSATGEERTLGKSNSIKIKGENGKNARDPRLSKREESIAKIGKKKYQKINLDEAEEF
FELISKAQSNRADDQRGLLRKEDLVLPEFLRLPPGSTELTLPTPAAVAKGFSKRSATGNGRESASQPGEQ
WEPVQESSDSPSTSPGSASSPPGPPGTTPPGQKSPSGPFCTPQSPVSLAQEGTAQIWKRQSQEVEAGGIQ
TVEDEHVAELTLMGEGDISSPNSTLLPPPSTPQEVPGPSRPGSGTHGSRDLPVNRIIDVDLVTGSAPGRD
GGIAGAQAGPGRSQASGGPPTSDLPGLGPVPGEPAKPKTSAHHATFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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