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Report for CCDS55468.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55468.2 Public Homo sapiens X H2BW2 24 110 108 CCDS HistoryNCBI Gene:286436Re-query CCDS DB by CCDS ID:55468.2Re-query CCDS DB by GeneID:286436See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 55468.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 55468.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355016.8 ENSP00000347119.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355016.8Link to Ensembl Protein Viewer:ENSP00000347119.4Re-query CCDS DB by Nucleotide ID:ENST00000355016Re-query CCDS DB by Protein ID:ENSP00000347119
Original member Current member EBI ENST00000675318.3 ENSP00000502072.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000675318.3Link to Ensembl Protein Viewer:ENSP00000502072.2Re-query CCDS DB by Nucleotide ID:ENST00000675318Re-query CCDS DB by Protein ID:ENSP00000502072
Original member Current member NCBI NM_001164416.4 NP_001157888.2 Accepted alive Link to Nucleotide Sequence:NM_001164416.4Link to Protein Sequence:NP_001157888.2Re-query CCDS DB by Nucleotide ID:NM_001164416Re-query CCDS DB by Protein ID:NP_001157888Link to BLAST:NP_001157888.2
Original member Current member NCBI NM_001388464.1 NP_001375393.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001388464.1Link to Protein Sequence:NP_001375393.1Re-query CCDS DB by Nucleotide ID:NM_001388464Re-query CCDS DB by Protein ID:NP_001375393Link to BLAST:NP_001375393.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157888.2 148 P0C1H6-2 148 100% 0 0
NP_001375393.1 148 P0C1H6-2 148 100% 0 0

Chromosomal Locations for CCDS 55468.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 104039995 104040404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104040828 104040864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGGCTGAGGCTTCCTCTGAGACAACCTCGGAGGAAGGCCAGAGCATCCAGGAGCCCAAAGAGGCCAACT
CCACGAAGGCCCAGAAGCAGAAGAGGCGAGGGTGCCGAGGCTCCCGCAGGCGCCACGCCAACCGCCGTGG
GGACAGCTTCGGGGACAGCTTCACCCCCTATTTCCCCCGGGTGCTGAAGCAGGTTCACCAGGGCCTCAGC
CTTTCCCAGGAGGCCGTGAGTGTCATGGATTCTATGATCCATGACATATTGGACCGCATCGCCACCGAGG
CTGGTCAGCTGGCCCATTACACCAAGCGCGTGACCATCACCTCCCGGGACATCCAGATGGCCGTGCGACT
GCTGCTGCCGGGGAAGATGGGCAAGCTCGCCGAGGCCCAGGGCACGAATGCCGCCCTCAGAACTTCATTA
TGTGCGATATGGCAACAGAGAAAGTGA

Translation (148 aa):
MAEASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHQGLS
LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSL
CAIWQQRK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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