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Report for CCDS43097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43097.1 Public Homo sapiens 3 PARP3 24 110 108 CCDS HistoryNCBI Gene:10039Re-query CCDS DB by CCDS ID:43097.1Re-query CCDS DB by GeneID:10039See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 43097.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398755.8 ENSP00000381740.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398755.8Link to Ensembl Protein Viewer:ENSP00000381740.4Re-query CCDS DB by Nucleotide ID:ENST00000398755Re-query CCDS DB by Protein ID:ENSP00000381740
Original member Current member EBI ENST00000417220.6 ENSP00000395951.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417220.6Link to Ensembl Protein Viewer:ENSP00000395951.2Re-query CCDS DB by Nucleotide ID:ENST00000417220Re-query CCDS DB by Protein ID:ENSP00000395951
Original member Current member EBI ENST00000431474.6 ENSP00000401511.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431474.6Link to Ensembl Protein Viewer:ENSP00000401511.1Re-query CCDS DB by Nucleotide ID:ENST00000431474Re-query CCDS DB by Protein ID:ENSP00000401511
Original member Current member EBI ENST00000471971.6 ENSP00000417396.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000471971.6Link to Ensembl Protein Viewer:ENSP00000417396.2Re-query CCDS DB by Nucleotide ID:ENST00000471971Re-query CCDS DB by Protein ID:ENSP00000417396
Original member Current member EBI ENST00000498510.2 ENSP00000417625.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498510.2Link to Ensembl Protein Viewer:ENSP00000417625.2Re-query CCDS DB by Nucleotide ID:ENST00000498510Re-query CCDS DB by Protein ID:ENSP00000417625
Original member Current member NCBI NM_001003931.4 NP_001003931.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001003931.4Link to Protein Sequence:NP_001003931.4Re-query CCDS DB by Nucleotide ID:NM_001003931Re-query CCDS DB by Protein ID:NP_001003931Link to BLAST:NP_001003931.4
Original member Current member NCBI NM_001370239.1 NP_001357168.1 Accepted alive Link to Nucleotide Sequence:NM_001370239.1Link to Protein Sequence:NP_001357168.1Re-query CCDS DB by Nucleotide ID:NM_001370239Re-query CCDS DB by Protein ID:NP_001357168Link to BLAST:NP_001357168.1
Original member Current member NCBI NM_001370240.1 NP_001357169.1 Accepted alive Link to Nucleotide Sequence:NM_001370240.1Link to Protein Sequence:NP_001357169.1Re-query CCDS DB by Nucleotide ID:NM_001370240Re-query CCDS DB by Protein ID:NP_001357169Link to BLAST:NP_001357169.1
Original member Current member NCBI NM_005485.6 NP_005476.4 Accepted alive Link to Nucleotide Sequence:NM_005485.6Link to Protein Sequence:NP_005476.4Re-query CCDS DB by Nucleotide ID:NM_005485Re-query CCDS DB by Protein ID:NP_005476Link to BLAST:NP_005476.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003931.4 533 Q9Y6F1-1 533 100% 0 0
NP_001357168.1 533 Q9Y6F1-1 533 100% 0 0
NP_001357169.1 533 Q9Y6F1-1 533 100% 0 0
NP_005476.4 533 Q9Y6F1-1 533 100% 0 0

Chromosomal Locations for CCDS 43097.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51943356 51943538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51944089 51944217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51944390 51944578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51944778 51944910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51944998 51945224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51945495 51945644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51945853 51945939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51946166 51946343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51947740 51947895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51948311 51948480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCTCCAAAGCCGAAGCCCTGGGTACAGACTGAGGGCCCTGAGAAGAAGAAGGGCCGGCAGGCAGGAA
GGGAGGAGGACCCCTTCCGCTCCACCGCTGAGGCCCTCAAGGCCATACCCGCAGAGAAGCGCATAATCCG
CGTGGATCCAACATGTCCACTCAGCAGCAACCCCGGGACCCAGGTGTATGAGGACTACAACTGCACCCTG
AACCAGACCAACATCGAGAACAACAACAACAAGTTCTACATCATCCAGCTGCTCCAAGACAGCAACCGCT
TCTTCACCTGCTGGAACCGCTGGGGCCGTGTGGGAGAGGTCGGCCAGTCAAAGATCAACCACTTCACAAG
GCTAGAAGATGCAAAGAAGGACTTTGAGAAGAAATTTCGGGAAAAGACCAAGAACAACTGGGCAGAGCGG
GACCACTTTGTGTCTCACCCGGGCAAGTACACACTTATCGAAGTACAGGCAGAGGATGAGGCCCAGGAAG
CTGTGGTGAAGGTGGACAGAGGCCCAGTGAGGACTGTGACTAAGCGGGTGCAGCCCTGCTCCCTGGACCC
AGCCACGCAGAAGCTCATCACTAACATCTTCAGCAAGGAGATGTTCAAGAACACCATGGCCCTCATGGAC
CTGGATGTGAAGAAGATGCCCCTGGGAAAGCTGAGCAAGCAACAGATTGCACGGGGTTTCGAGGCCTTGG
AGGCGCTGGAGGAGGCCCTGAAAGGCCCCACGGATGGTGGCCAAAGCCTGGAGGAGCTGTCCTCACACTT
TTACACCGTCATCCCGCACAACTTCGGCCACAGCCAGCCCCCGCCCATCAATTCCCCTGAGCTTCTGCAG
GCCAAGAAGGACATGCTGCTGGTGCTGGCGGACATCGAGCTGGCCCAGGCCCTGCAGGCAGTCTCTGAGC
AGGAGAAGACGGTGGAGGAGGTGCCACACCCCCTGGACCGAGACTACCAGCTTCTCAAGTGCCAGCTGCA
GCTGCTAGACTCTGGAGCACCTGAGTACAAGGTGATACAGACCTACTTAGAACAGACTGGCAGCAACCAC
AGGTGCCCTACACTTCAACACATCTGGAAAGTAAACCAAGAAGGGGAGGAAGACAGATTCCAGGCCCACT
CCAAACTGGGTAATCGGAAGCTGCTGTGGCATGGCACCAACATGGCCGTGGTGGCCGCCATCCTCACTAG
TGGGCTCCGCATCATGCCACATTCTGGTGGGCGTGTTGGCAAGGGCATCTACTTTGCCTCAGAGAACAGC
AAGTCAGCTGGATATGTTATTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTCCTGGGTGAGG
TGGCCCTGGGCAGAGAGCACCATATCAACACGGACAACCCCAGCTTGAAGAGCCCACCTCCTGGCTTCGA
CAGTGTCATTGCCCGAGGCCACACCGAGCCTGATCCGACCCAGGACACTGAGTTGGAGCTGGATGGCCAG
CAAGTGGTGGTGCCCCAGGGCCAGCCTGTGCCCTGCCCAGAGTTCAGCAGCTCCACATTCTCCCAGAGCG
AGTACCTCATCTACCAGGAGAGCCAGTGTCGCCTGCGCTACCTGCTGGAGGTCCACCTCTGA

Translation (533 aa):
MAPKPKPWVQTEGPEKKKGRQAGREEDPFRSTAEALKAIPAEKRIIRVDPTCPLSSNPGTQVYEDYNCTL
NQTNIENNNNKFYIIQLLQDSNRFFTCWNRWGRVGEVGQSKINHFTRLEDAKKDFEKKFREKTKNNWAER
DHFVSHPGKYTLIEVQAEDEAQEAVVKVDRGPVRTVTKRVQPCSLDPATQKLITNIFSKEMFKNTMALMD
LDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDGGQSLEELSSHFYTVIPHNFGHSQPPPINSPELLQ
AKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNH
RCPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPHSGGRVGKGIYFASENS
KSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQ
QVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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