NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14183.1 Public Homo sapiens X RAI2 24 110 108 CCDS HistoryNCBI Gene:10742Re-query CCDS DB by CCDS ID:14183.1Re-query CCDS DB by GeneID:10742See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14183.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331511.5 ENSP00000333456.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000331511.5Link to Ensembl Protein Viewer:ENSP00000333456.1Re-query CCDS DB by Nucleotide ID:ENST00000331511Re-query CCDS DB by Protein ID:ENSP00000333456
Original member Current member EBI ENST00000360011.5 ENSP00000353106.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360011.5Link to Ensembl Protein Viewer:ENSP00000353106.1Re-query CCDS DB by Nucleotide ID:ENST00000360011Re-query CCDS DB by Protein ID:ENSP00000353106
Original member Current member EBI ENST00000451717.6 ENSP00000401323.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000451717.6Link to Ensembl Protein Viewer:ENSP00000401323.1Re-query CCDS DB by Nucleotide ID:ENST00000451717Re-query CCDS DB by Protein ID:ENSP00000401323
Original member Current member EBI ENST00000545871.1 ENSP00000444210.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545871.1Link to Ensembl Protein Viewer:ENSP00000444210.1Re-query CCDS DB by Nucleotide ID:ENST00000545871Re-query CCDS DB by Protein ID:ENSP00000444210
Original member Current member NCBI NM_001172739.2 NP_001166210.2 Accepted alive Link to Nucleotide Sequence:NM_001172739.2Link to Protein Sequence:NP_001166210.2Re-query CCDS DB by Nucleotide ID:NM_001172739Re-query CCDS DB by Protein ID:NP_001166210Link to BLAST:NP_001166210.2
Original member Current member NCBI NM_001172743.2 NP_001166214.2 Accepted alive Link to Nucleotide Sequence:NM_001172743.2Link to Protein Sequence:NP_001166214.2Re-query CCDS DB by Nucleotide ID:NM_001172743Re-query CCDS DB by Protein ID:NP_001166214Link to BLAST:NP_001166214.2
Original member Current member NCBI NM_021785.6 NP_068557.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021785.6Link to Protein Sequence:NP_068557.4Re-query CCDS DB by Nucleotide ID:NM_021785Re-query CCDS DB by Protein ID:NP_068557Link to BLAST:NP_068557.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166210.2 530 Q9Y5P3-1 530 100% 0 0
NP_001166214.2 530 Q9Y5P3-1 530 100% 0 0
NP_068557.4 530 Q9Y5P3-1 530 100% 0 0

Chromosomal Locations for CCDS 14183.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 17800418 17802010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGACGACCTGCAGTCCCAGAACCTCTCCATGGACATGACTGACTCCCCTCCTGCCTTGGCTAATAACA
GACTGGAGAATGGCATGGCTCAGCTGATCACCACCGAGGCCTGGAACATCAACTCCACTGACCTGGTAAA
GAAGGCCCTGGTGACCGTGCCAGCCCCATCCATTCTGAACCCCCCTGCCGAGTCTCAGAGTGGCATGGCT
CTGAAGGTGGCGGCCACTGTGTTGCAGCCCCTGTGCCTCGGGGAGAGCCCAGTGGTGATGCCCATTCACA
TGCAGGTGGAGGGAAGCTCCGCACCAGAGCTCAATCCGAATGGCAATGCCACCTACGTCATGACCACCCA
GGGCCCCGTGCAACTGCCCGTGGTGCTGGAGCAGCACGTCTTTCAGCACCTCAACTCCCCTCTGGTCCTG
CCGCAGGAGGCCCCATGCTCCTCCAGTACCATCCACAACAACCTCTTCCAGGGAGCGGAGGACCCCGAGG
CCCAGCCCCAGCTCCTGGACCTGAGGATCCCCAGCCAGCCGCAGGAGCCCACTTTGCCATTTGAAGCTGT
GCTCCAGAATTTGTTTCCCTCCCAGGGCACTCTCGGGCCCCCACCCTGTCAGCCTCCTCCTGGCTATGCC
CCTGTGCCCCCACAGCCTTTTAGCTCCCCCTTGTCCCCCCTGGTCCCACCAGCCACCCTCTTGGTGCCGT
ATCCTGTAATCGTCCCCTTGCCTGTGCCAGTCCCTATTCCCATCCCCATCCCGATGCCTCAGAGTTCTGA
ATCCAAGTTCAGCTCCAGTTTCCCCAAGCCACCATCTTCCTTCGGCCTGCACCCCTTTAAAGGCACCCAG
ACCCCTCTGGAAAAAGATGAACTGAAGCCCTTTGACATCCTCCAGCCTAAGGAGTACTTCCAGCTCAGCC
GCCACACGGTCATTAAGATGGGAAGTGAGAACGAGGCCCTGGATCTCTCCATGAAGTCAGTGCCCTGGCT
CAAGGCTGGTGAAGTCAGTCCCCCAATCTTCCAGGAAGATGCAGCCCTAGACCTGTCAGTGGCAGCCCAC
CGGAAATCCGAGCCTCCCCCTGAGACACTGTATGACAGTGGTGCATCAGTGGACAGCTCAGGTCACACAG
TGATGGAGAAACTTCCCAGTGGCATGGAAATTTCTTTTGCCCCTGCCACGTCCCATGAGGCCCCAGCCAT
GATGGATAGTCACATCAGCAGCAGTGATGCTGCTACCGAGATGCTCAGCCAGCCCAACCACCCCAGCGGC
GAAGTCAAGGCTGAAAATAACATTGAGATGGTGGGCGAGTCCCAGGCGGCCAAGGTCATTGTCTCTGTCG
AAGATGCTGTGCCTACCATATTCTGTGGCAAGATCAAAGGCCTCTCAGGGGTGTCCACCAAAAACTTCTC
CTTCAAAAGAGAAGACTCCGTGCTTCAGGGCTATGACATCAACAGCCAAGGGGAAGAGTCCATGGGAAAT
GCAGAGCCCCTTAGGAAACCCATCAAAAACCGGAGCATAAAGTTAAAGAAAGTGAACTCCCAGGAAATAC
ACATGCTCCCAATCAAAAAACAACGGCTGGCCACCTTTTTTCCAAGAAAGTAA

Translation (530 aa):
MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILNPPAESQSGMA
LKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPVQLPVVLEQHVFQHLNSPLVL
PQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEPTLPFEAVLQNLFPSQGTLGPPPCQPPPGYA
PVPPQPFSSPLSPLVPPATLLVPYPVIVPLPVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQ
TPLEKDELKPFDILQPKEYFQLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAH
RKSEPPPETLYDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDINSQGEESMGN
AEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH