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Report for CCDS43325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43325.1 Public Homo sapiens 5 GTF2H2C 24 110 108 CCDS HistoryNCBI Gene:728340Re-query CCDS DB by CCDS ID:43325.1Re-query CCDS DB by GeneID:728340See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43325.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380729.8 ENSP00000370105.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380729.8Link to Ensembl Protein Viewer:ENSP00000370105.3Re-query CCDS DB by Nucleotide ID:ENST00000380729Re-query CCDS DB by Protein ID:ENSP00000370105
Original member Current member EBI ENST00000510979.5 ENSP00000422907.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510979.5Link to Ensembl Protein Viewer:ENSP00000422907.1Re-query CCDS DB by Nucleotide ID:ENST00000510979Re-query CCDS DB by Protein ID:ENSP00000422907
Original member Current member NCBI NM_001098728.3 NP_001092198.1 Accepted alive Link to Nucleotide Sequence:NM_001098728.3Link to Protein Sequence:NP_001092198.1Re-query CCDS DB by Nucleotide ID:NM_001098728Re-query CCDS DB by Protein ID:NP_001092198Link to BLAST:NP_001092198.1
Original member Current member NCBI NM_001375998.1 NP_001362927.1 Accepted alive Link to Nucleotide Sequence:NM_001375998.1Link to Protein Sequence:NP_001362927.1Re-query CCDS DB by Nucleotide ID:NM_001375998Re-query CCDS DB by Protein ID:NP_001362927Link to BLAST:NP_001362927.1
Original member Current member NCBI NM_001375999.1 NP_001362928.1 Accepted alive Link to Nucleotide Sequence:NM_001375999.1Link to Protein Sequence:NP_001362928.1Re-query CCDS DB by Nucleotide ID:NM_001375999Re-query CCDS DB by Protein ID:NP_001362928Link to BLAST:NP_001362928.1
Original member Current member NCBI NM_001376000.2 NP_001362929.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376000.2Link to Protein Sequence:NP_001362929.1Re-query CCDS DB by Nucleotide ID:NM_001376000Re-query CCDS DB by Protein ID:NP_001362929Link to BLAST:NP_001362929.1
Original member Current member NCBI NM_001376001.1 NP_001362930.1 Accepted alive Link to Nucleotide Sequence:NM_001376001.1Link to Protein Sequence:NP_001362930.1Re-query CCDS DB by Nucleotide ID:NM_001376001Re-query CCDS DB by Protein ID:NP_001362930Link to BLAST:NP_001362930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092198.1 395 Q6P1K8 395 100% 0 0
NP_001362927.1 395 Q6P1K8 395 100% 0 0
NP_001362928.1 395 Q6P1K8 395 100% 0 0
NP_001362929.1 395 Q6P1K8 395 100% 0 0
NP_001362930.1 395 Q6P1K8 395 100% 0 0

Chromosomal Locations for CCDS 43325.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69565133 69565188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69566131 69566208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69566589 69566625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69566967 69567053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69567727 69567777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69568153 69568207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69572445 69572550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69578712 69578802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69579021 69579108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69579757 69579864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69582366 69582429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69585594 69585697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69586254 69586356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69590328 69590367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69592079 69592198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAGATTCTTAAAG
AAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAGGCAAAGAGAAAAAGAGTATT
TGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCACCTTTATGTGGTAGTAGATGGATCAAGAACA
ATGGAAGACCAAGATTTAAAGCCTAATAGACTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGG
AATATTTTGATCAAAATCCTATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATT
GACTGAACTTTCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGGAAGCTGTGGATATGACCTGCCAT
GGAGAGCCATCTCTTTATAATTCCCTAAGCATGGCTATGCAGACTCTAAAACACATGCCTGGACATACAA
GTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCTAATATTTATGATCTAATCAA
GACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGATTGTCTGCAGAAGTTCGCGTTTGCACTGTA
CTTGCTCGTGAAACTGGTGGCACGTACCATGTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACAC
ATCATCTTAGTCCTCCTCCTGCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCA
CACCATTGCTTCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAGCTACCTGTTG
AATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGGTCTTACCATCATTTGTTTCC
TTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAATGGAGAAAGATTTTGTTATGGATGTCAGGGG
GAATTGAAAGACCAACATGTTTATGTTTGTGCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTT
TTGTTCATGATTCTCTACACTGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA

Translation (395 aa):
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGSRT
MEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKEAVDMTCH
GEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTV
LARETGGTYHVILDESHYKELLTHHLSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNT
EPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQG
ELKDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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