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Report for CCDS2148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2148.1 Public Homo sapiens 2 GPR17 24 110 108 CCDS HistoryNCBI Gene:2840Re-query CCDS DB by CCDS ID:2148.1Re-query CCDS DB by GeneID:2840See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2148.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272644.7 ENSP00000272644.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000272644.7Link to Ensembl Protein Viewer:ENSP00000272644.3Re-query CCDS DB by Nucleotide ID:ENST00000272644Re-query CCDS DB by Protein ID:ENSP00000272644
Original member Current member EBI ENST00000393018.3 ENSP00000376741.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393018.3Link to Ensembl Protein Viewer:ENSP00000376741.3Re-query CCDS DB by Nucleotide ID:ENST00000393018Re-query CCDS DB by Protein ID:ENSP00000376741
Original member Current member EBI ENST00000544369.5 ENSP00000442982.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544369.5Link to Ensembl Protein Viewer:ENSP00000442982.1Re-query CCDS DB by Nucleotide ID:ENST00000544369Re-query CCDS DB by Protein ID:ENSP00000442982
Original member Current member NCBI NM_001161415.2 NP_001154887.1 Accepted alive Link to Nucleotide Sequence:NM_001161415.2Link to Protein Sequence:NP_001154887.1Re-query CCDS DB by Nucleotide ID:NM_001161415Re-query CCDS DB by Protein ID:NP_001154887Link to BLAST:NP_001154887.1
Original member Current member NCBI NM_005291.3 NP_005282.1 Accepted alive Link to Nucleotide Sequence:NM_005291.3Link to Protein Sequence:NP_005282.1Re-query CCDS DB by Nucleotide ID:NM_005291Re-query CCDS DB by Protein ID:NP_005282Link to BLAST:NP_005282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154887.1 367 Q13304-1 367 100% 0 0
NP_005282.1 367 Q13304-1 367 100% 0 0

Chromosomal Locations for CCDS 2148.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127650012 127650075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127650716 127651755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGTCCAAACGGAGTTGGTGGGCTGGATCCAGAAAGCCCCCAAGAGAGATGCTGAAACTCTCAGGCTCTG
AC
TCCAGCCAAAGCATGAATGGCCTTGAAGTGGCTCCCCCAGGTCTGATCACCAACTTCTCCCTGGCCAC
G
GCAGAGCAATGTGGCCAGGAGACGCCACTGGAGAACATGCTGTTCGCCTCCTTCTACCTTCTGGATTTT
ATC
CTGGCTTTAGTTGGCAATACCCTGGCTCTGTGGCTTTTCATCCGAGACCACAAGTCCGGGACCCCGG
CC
AACGTGTTCCTGATGCATCTGGCCGTGGCCGACTTGTCGTGCGTGCTGGTCCTGCCCACCCGCCTGGT
C
TACCACTTCTCTGGGAACCACTGGCCATTTGGGGAAATCGCATGCCGTCTCACCGGCTTCCTCTTCTAC
CTC
AACATGTACGCCAGCATCTACTTCCTCACCTGCATCAGCGCCGACCGTTTCCTGGCCATTGTGCACC
CG
GTCAAGTCCCTCAAGCTCCGCAGGCCCCTCTACGCACACCTGGCCTGTGCCTTCCTGTGGGTGGTGGT
G
GCTGTGGCCATGGCCCCGCTGCTGGTGAGCCCACAGACCGTGCAGACCAACCACACGGTGGTCTGCCTG
CAG
CTGTACCGGGAGAAGGCCTCCCACCATGCCCTGGTGTCCCTGGCAGTGGCCTTCACCTTCCCGTTCA
TC
ACCACGGTCACCTGCTACCTGCTGATCATCCGCAGCCTGCGGCAGGGCCTGCGTGTGGAGAAGCGCCT
C
AAGACCAAGGCAGTGCGCATGATCGCCATAGTGCTGGCCATCTTCCTGGTCTGCTTCGTGCCCTACCAC
GTC
AACCGCTCCGTCTACGTGCTGCACTACCGCAGCCATGGGGCCTCCTGCGCCACCCAGCGCATCCTGG
CC
CTGGCAAACCGCATCACCTCCTGCCTCACCAGCCTCAACGGGGCACTCGACCCCATCATGTATTTCTT
C
GTGGCTGAGAAGTTCCGCCACGCCCTGTGCAACTTGCTCTGTGGCAAAAGGCTCAAGGGCCCGCCCCCC
AGC
TTCGAAGGGAAAACCAACGAGAGCTCGCTGAGTGCCAAGTCAGAGCTGTGA


Translation (367 aa):
MSKRSWWAGSRKPPREMLKLSGSDSSQSMNGLEVAPPGLITNFSLATAEQCGQETPLENMLFASFYLLDF
I
LALVGNTLALWLFIRDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIACRLTGFLFY
L
NMYASIYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWVVVAVAMAPLLVSPQTVQTNHTVVCL
Q
LYREKASHHALVSLAVAFTFPFITTVTCYLLIIRSLRQGLRVEKRLKTKAVRMIAIVLAIFLVCFVPYH
V
NRSVYVLHYRSHGASCATQRILALANRITSCLTSLNGALDPIMYFFVAEKFRHALCNLLCGKRLKGPPP
S
FEGKTNESSLSAKSEL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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