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Report for CCDS13260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13260.1 Public Homo sapiens 20 CPNE1 24 110 108 CCDS HistoryNCBI Gene:8904Re-query CCDS DB by CCDS ID:13260.1Re-query CCDS DB by GeneID:8904See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13260.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352393.8 ENSP00000336945.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352393.8Link to Ensembl Protein Viewer:ENSP00000336945.4Re-query CCDS DB by Nucleotide ID:ENST00000352393Re-query CCDS DB by Protein ID:ENSP00000336945
Original member Current member EBI ENST00000397443.7 ENSP00000380585.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397443.7Link to Ensembl Protein Viewer:ENSP00000380585.1Re-query CCDS DB by Nucleotide ID:ENST00000397443Re-query CCDS DB by Protein ID:ENSP00000380585
Original member Current member NCBI NM_152925.3 NP_690902.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152925.3Link to Protein Sequence:NP_690902.1Re-query CCDS DB by Nucleotide ID:NM_152925Re-query CCDS DB by Protein ID:NP_690902Link to BLAST:NP_690902.1
Original member Current member NCBI NM_152926.3 NP_690903.1 Accepted alive Link to Nucleotide Sequence:NM_152926.3Link to Protein Sequence:NP_690903.1Re-query CCDS DB by Nucleotide ID:NM_152926Re-query CCDS DB by Protein ID:NP_690903Link to BLAST:NP_690903.1
Original member Current member NCBI NM_152927.3 NP_690904.1 Accepted alive Link to Nucleotide Sequence:NM_152927.3Link to Protein Sequence:NP_690904.1Re-query CCDS DB by Nucleotide ID:NM_152927Re-query CCDS DB by Protein ID:NP_690904Link to BLAST:NP_690904.1
Original member Current member NCBI NM_152928.3 NP_690905.1 Accepted alive Link to Nucleotide Sequence:NM_152928.3Link to Protein Sequence:NP_690905.1Re-query CCDS DB by Nucleotide ID:NM_152928Re-query CCDS DB by Protein ID:NP_690905Link to BLAST:NP_690905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690902.1 537 Q99829 537 100% 0 0
NP_690903.1 537 Q99829 537 100% 0 0
NP_690904.1 537 Q99829 537 100% 0 0
NP_690905.1 537 Q99829 537 100% 0 0

Chromosomal Locations for CCDS 13260.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35626241 35626381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35626567 35626803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35627280 35627413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35630439 35630490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35630741 35630795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35630901 35631034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35631114 35631173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35631268 35631354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35631492 35631578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35631688 35631777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35631945 35632025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35632163 35632234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35632311 35632385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35632517 35632696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35632795 35632923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGCCCACTGCGTGACCTTGGTTCAGCTGTCCATTTCCTGTGACCATCTCATTGACAAGGACATCGGCT
CCAAGTCTGACCCACTCTGCGTCCTTTTACAGGATGTGGGAGGGGGCAGCTGGGCTGAGCTTGGCCGGAC
TGAACGGGTGCGGAACTGCTCAAGCCCTGAGTTCTCCAAGACTCTACAGCTTGAGTACCGCTTTGAGACA
GTCCAGAAGCTACGCTTTGGAATCTATGACATAGACAACAAGACGCCAGAGCTGAGGGATGATGACTTCC
TAGGGGGTGCTGAGTGTTCCCTAGGACAGATTGTGTCCAGCCAGGTACTGACTCTCCCCTTGATGCTGAA
GCCTGGAAAACCTGCTGGGCGGGGGACCATCACGGTCTCAGCTCAGGAATTAAAGGACAATCGTGTAGTA
ACCATGGAGGTAGAGGCCAGAAACCTAGATAAGAAGGACTTCCTGGGAAAATCAGATCCATTTCTGGAGT
TCTTCCGCCAGGGTGATGGGAAATGGCACCTGGTGTACAGATCTGAGGTCATCAAGAACAACCTGAACCC
TACATGGAAGCGTTTCTCAGTCCCCGTTCAGCATTTCTGTGGTGGGAACCCCAGCACACCCATCCAGGTG
CAATGCTCCGATTATGACAGTGACGGGTCACATGATCTCATCGGTACCTTCCACACCAGCTTGGCCCAGC
TGCAGGCAGTCCCGGCTGAGTTTGAATGCATCCACCCTGAGAAGCAGCAGAAAAAGAAAAGCTACAAGAA
CTCTGGAACTATCCGTGTCAAGATTTGTCGGGTAGAAACAGAGTACTCCTTTCTGGACTATGTGATGGGA
GGCTGTCAGATCAACTTCACTGTGGGCGTGGACTTCACTGGCTCCAATGGAGACCCCTCCTCACCTGACT
CCCTACACTACCTGAGTCCAACAGGGGTCAATGAGTACCTGATGGCACTGTGGAGTGTGGGCAGCGTGGT
TCAGGACTATGACTCAGACAAGCTGTTCCCTGCATTTGGATTTGGGGCCCAGGTTCCCCCTGACTGGCAG
GTCTCGCATGAATTTGCCTTGAATTTCAACCCCAGTAACCCCTACTGTGCAGGCATCCAGGGCATTGTGG
ATGCCTACCGCCAAGCCCTGCCCCAAGTTCGCCTCTATGGCCCTACCAACTTTGCACCCATCATCAACCA
TGTGGCCAGGTTTGCAGCCCAGGCTGCACATCAGGGGACTGCCTCGCAATACTTCATGCTGTTGCTGCTG
ACTGATGGTGCTGTGACGGATGTGGAAGCCACACGTGAGGCTGTGGTGCGTGCCTCGAACCTGCCCATGT
CAGTGATCATTGTGGGTGTGGGTGGTGCTGACTTTGAGGCCATGGAGCAGCTGGACGCTGATGGTGGACC
CCTGCATACACGTTCTGGGCAGGCTGCTGCCCGCGACATTGTGCAGTTTGTACCCTACCGCCGGTTCCAG
AATGCCCCTCGGGAGGCATTGGCACAGACCGTGCTCGCAGAAGTGCCCACACAACTGGTCTCATACTTCA
GGGCCCAGGGTTGGGCCCCGCTCAAGCCACTTCCACCCTCAGCCAAGGATCCTGCACAGGCCCCCCAGGC
CTAG

Translation (537 aa):
MAHCVTLVQLSISCDHLIDKDIGSKSDPLCVLLQDVGGGSWAELGRTERVRNCSSPEFSKTLQLEYRFET
VQKLRFGIYDIDNKTPELRDDDFLGGAECSLGQIVSSQVLTLPLMLKPGKPAGRGTITVSAQELKDNRVV
TMEVEARNLDKKDFLGKSDPFLEFFRQGDGKWHLVYRSEVIKNNLNPTWKRFSVPVQHFCGGNPSTPIQV
QCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKKSYKNSGTIRVKICRVETEYSFLDYVMG
GCQINFTVGVDFTGSNGDPSSPDSLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQ
VSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAHQGTASQYFMLLLL
TDGAVTDVEATREAVVRASNLPMSVIIVGVGGADFEAMEQLDADGGPLHTRSGQAAARDIVQFVPYRRFQ
NAPREALAQTVLAEVPTQLVSYFRAQGWAPLKPLPPSAKDPAQAPQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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