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Report for CCDS91164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91164.1 Public Homo sapiens 1 LIN9 24 110 108 CCDS HistoryNCBI Gene:286826Re-query CCDS DB by CCDS ID:91164.1Re-query CCDS DB by GeneID:286826See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91164.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366808.6 ENSP00000355773.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366808.6Link to Ensembl Protein Viewer:ENSP00000355773.2Re-query CCDS DB by Nucleotide ID:ENST00000366808Re-query CCDS DB by Protein ID:ENSP00000355773
Original member Current member NCBI NM_001270410.2 NP_001257339.1 Accepted alive Link to Nucleotide Sequence:NM_001270410.2Link to Protein Sequence:NP_001257339.1Re-query CCDS DB by Nucleotide ID:NM_001270410Re-query CCDS DB by Protein ID:NP_001257339Link to BLAST:NP_001257339.1
Original member Current member NCBI NM_001366241.1 NP_001353170.1 Accepted alive Link to Nucleotide Sequence:NM_001366241.1Link to Protein Sequence:NP_001353170.1Re-query CCDS DB by Nucleotide ID:NM_001366241Re-query CCDS DB by Protein ID:NP_001353170Link to BLAST:NP_001353170.1

Chromosomal Locations for CCDS 91164.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 226232501 226232606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226233096 226233193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226233344 226233523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226238971 226239096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226250839 226250919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226265533 226265634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226266213 226266332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226267957 226268090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226277775 226277932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226286333 226286458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226287664 226287797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226295842 226295946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226297719 226297721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGCCTTTCAGAAATTCAAAACGAAGTCGACTTTTTTCTGATGAAGATGATAGGCAAATAAATACAAGGT
CACCTAAAAGAAACCAGAGGGTTGCAATGGTTCCACAGAAATTTACAGCAACAATGTCAACACCAGATAA
GAAAGCTTCACAGAAGATTGGTTTTCGATTACGTAATCTGCTCAAGCTTCCTAAAGCACATAAATGGTGT
ATATACGAGTGGTTCTATTCAAATATAGATAAACCACTTTTTGAAGGTGATAATGACTTCTGTGTATGTC
TAAAGGAATCTTTTCCTAATTTGAAAACAAGAAAGTTAACAAGAGTAGAATGGGGAAAAATTCGGCGGCT
TATGGGAAAACCACGGAGATGTTCTTCTGCATTTTTTGAGGAAGAGAGATCAGCATTAAAACAGAAACGG
CAGAAAATAAGGCTCTTACAACAAAGGAAAGTTGCAGATGTTTCACAATTCAAAGATCTCCCAGATGAAA
TTCCTTTGCCTCTGGTTATTGGAACGAAAGTTACAGCACGATTACGTGGTGTTCATGATGGTTTGTTCAC
TGGACAAATAGATGCTGTGGATACTCTTAATGCTACTTATAGAGTAACTTTTGATAGGACAGGGCTTGGA
ACCCATACCATCCCTGACTATGAAGTTCTCAGTAATGAACCTCATGAGACAATGCCAATTGCTGCCTTTG
GACAAAAACAGCGGCCTTCTCGATTTTTTATGACCCCACCACGGTTACATTATACTCCTCCTCTCCAGTC
ACCAATTATAGATAATGATCCTTTATTAGGACAGTCGCCGTGGAGAAGTAAAATTTCTGGCTCTGACACT
GAAACATTAGGTGGTTTTCCAGTAGAATTTCTTATCCAAGTGACCAGATTATCAAAAATTCTCATGATTA
AAAAGGAACATATCAAGAAATTAAGGGAAATGAACACAGAAGCAGAAAAATTGAAATCATATTCCATGCC
CATCAGCATTGAATTTCAGCGGAGATATGCAACAATTGTTCTGGAGCTTGAACAGCTGAACAAGGACCTA
AACAAAGTTTTGCATAAAGTTCAACAGTATTGCTATGAGCTTGCTCCAGACCAGGGGCTCCAGCCTGCAG
ATCAGCCAACAGATATGAGACGCAGGTGTGAGGAAGAAGCACAGGAAATTGTTCGGCATGCAAATTCCTC
AACAGGACAGCCCTGCGTTGAAAATGAAAATCTGACAGACTTAATTTCCAGGCTTACAGCTATTTTGTTA
CAAATTAAGTGTCTAGCAGAAGGAGGAGACCTGAATTCCTTTGAATTCAAATCACTTACAGACTCATTAA
ATGATATCAAGAGTACAATAGACGCTTCTAATATCAGTTGCTTTCAGAATAATGTAGAAATCCATGTTGC
ACATATTCAGAGTGGCCTGAGCCAGATGGGAAACTTACATGCCTTTGCAGCAAATAACACCAACAGAGAC
TGA

Translation (490 aa):
MPFRNSKRSRLFSDEDDRQINTRSPKRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWC
IYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKR
QKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLG
THTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDT
ETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDL
NKVLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILL
QIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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