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Report for CCDS4990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4990.1 Public Homo sapiens 6 LCA5 24 110 108 CCDS HistoryNCBI Gene:167691Re-query CCDS DB by CCDS ID:4990.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369846.9 ENSP00000358861.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369846.9Link to Ensembl Protein Viewer:ENSP00000358861.4Re-query CCDS DB by Nucleotide ID:ENST00000369846Re-query CCDS DB by Protein ID:ENSP00000358861
Original member Current member EBI ENST00000392959.5 ENSP00000376686.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392959.5Link to Ensembl Protein Viewer:ENSP00000376686.1Re-query CCDS DB by Nucleotide ID:ENST00000392959Re-query CCDS DB by Protein ID:ENSP00000376686
Original member Current member NCBI NM_001122769.3 NP_001116241.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122769.3Link to Protein Sequence:NP_001116241.1Re-query CCDS DB by Nucleotide ID:NM_001122769Re-query CCDS DB by Protein ID:NP_001116241Link to BLAST:NP_001116241.1
Original member Current member NCBI NM_181714.4 NP_859065.2 Accepted alive Link to Nucleotide Sequence:NM_181714.4Link to Protein Sequence:NP_859065.2Re-query CCDS DB by Nucleotide ID:NM_181714Re-query CCDS DB by Protein ID:NP_859065Link to BLAST:NP_859065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116241.1 697 Q86VQ0 697 100% 0 0
NP_859065.2 697 Q86VQ0 697 100% 0 0

Chromosomal Locations for CCDS 4990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 79487004 79487866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79489084 79489216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79491588 79491730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79492551 79492647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79493613 79493750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79513212 79513741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79518705 79518894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGGGGGAAAGAGCAGGAAGTCCAGGTACTGATCAAGAAAGAAAGGCAGGCAAACACCATTATTCTTACT
TATCTGATTTTGAAACGCCACAGTCTTCTGGCCGATCATCGCTGGTCAGTTCTTCACCTGCAAGTGTTAG
GAGAAAAAATCCTAAAAGACAAACTTCAGATGGCCAAGTACATCACCAAGCCCCTCGGAAACCAAGCCCT
AAGGGTCTACCAAACAGAAAGGGAGTCCGAGTGGGATTTCGCTCCCAGAGCCTCAATAGAGAGCCACTTC
GGAAAGATACTGATCTTGTTACAAAACGGATTCTGTCTGCAAGACTGCTAAAAATCAATGAGTTGCAGAA
TGAAGTATCTGAACTCCAGGTCAAGTTAGCTGAGCTGCTAAAAGAAAATAAATCTTTGAAAAGGCTTCAG
TACAGACAGGAGAAAGCCCTGAATAAGTTTGAAGATGCCGAAAATGAAATCTCACAACTTATATTTCGTC
ATAACAATGAGATTACAGCACTCAAAGAACGCTTAAGAAAATCTCAAGAGAAAGAACGGGCAACTGAGAA
AAGGGTAAAAGATACAGAAAGTGAACTATTTAGGACAAAATTTTCCTTACAGAAACTGAAAGAGATCTCT
GAAGCTAGACACCTACCTGAACGAGATGATTTGGCAAAGAAACTAGTTTCAGCAGAGTTAAAGTTAGATG
ACACCGAGAGAAGAATTAAGGAGCTATCGAAAAACCTTGAACTGAGTACTAACAGTTTCCAACGACAGTT
GCTTGCTGAAAGGAAAAGGGCATATGAGGCTCATGATGAAAATAAAGTTCTTCAAAAGGAGGTACAGCGA
CTATATCACAAATTAAAGGAAAAGGAGAGAGAACTGGATATAAAAAATATATATTCTAATCGTCTGCCAA
AGTCCTCTCCAAATAAAGAGAAAGAACTTGCATTAAGAAAAAATGCTGCATGCCAGAGTGATTTTGCAGA
CCTGTGTACAAAAGGAGTACAAACCATGGAAGACTTCAAGCCAGAAGAATATCCTTTAACTCCAGAAACA
ATTATGTGTTACGAAAACAAATGGGAAGAACCAGGACATCTTACTTTGGACTTGCAATCTCAAAAGCAAG
ACAGGCATGGAGAAGCAGGGATTCTAAACCCAATTATGGAAAGAGAAGAAAAATTTGTTACAGATGAAGA
ACTCCATGTCGTAAAACAGGAGGTTGAAAAGCTGGAGGATGAATGGGAAAGAGAAGAACTTGATAAAAAG
CAAAAAGAAAAGGCATCTTTACTGGAAAGAGAAGAAAAGCCAGAGTGGGAAACTGGAAGGTACCAACTAG
GAATGTATCCAATTCAGAATATGGATAAATTGCAAGGAGAGGAAGAAGAAAGACTGAAGAGAGAAATGCT
ACTTGCTAAACTGAATGAAATTGACAGAGAACTCCAAGATTCTCGAAATCTAAAATACCCTGTTTTGCCA
TTGTTACCTGATTTTGAATCAAAACTACACTCCCCAGAGAGAAGCCCCAAAACATACAGGTTCTCTGAAT
CCTCAGAGAGATTATTTAATGGGCATCATTTGCAAGACATCAGTTTCTCAACTCCAAAAGGAGAAGGTCA
GAATTCAGGAAATGTTAGAAGTCCAGCCTCCCCTAATGAGTTCGCATTTGGTAGCTACGTGCCTTCGTTT
GCAAAAACATCAGAGAGGTCAAATCCATTTAGTCAAAAAAGTAGTTTTTTGGATTTCCAAAGAAACAGTA
TGGAAAAACTTAGTAAAGATGGTGTAGATTTAATTACAAGAAAAGAGAAAAAAGCTAATTTGATGGAACA
GTTATTTGGTGCCAGTGGTAGCAGCACCATTTCCTCCAAAAGCAGTGACCCAAATTCTGTGGCTTCCAGT
AAAGGAGACATTGACCCTCTAAATTTTCTCCCTGGGAATAAAGGCAGCAGAGATCAAGAACATGATGAAG
ATGAAGGCTTTTTCCTCAGTGAAGGAAGAAGTTTTAATCCAAATAGGCACCGATTAAAACATGCAGACGA
TAAACCAGCAGTAAAAGCAGCTGATTCTGTAGAAGATGAAATTGAAGAAGTAGCACTGAGATGA

Translation (697 aa):
MGERAGSPGTDQERKAGKHHYSYLSDFETPQSSGRSSLVSSSPASVRRKNPKRQTSDGQVHHQAPRKPSP
KGLPNRKGVRVGFRSQSLNREPLRKDTDLVTKRILSARLLKINELQNEVSELQVKLAELLKENKSLKRLQ
YRQEKALNKFEDAENEISQLIFRHNNEITALKERLRKSQEKERATEKRVKDTESELFRTKFSLQKLKEIS
EARHLPERDDLAKKLVSAELKLDDTERRIKELSKNLELSTNSFQRQLLAERKRAYEAHDENKVLQKEVQR
LYHKLKEKERELDIKNIYSNRLPKSSPNKEKELALRKNAACQSDFADLCTKGVQTMEDFKPEEYPLTPET
IMCYENKWEEPGHLTLDLQSQKQDRHGEAGILNPIMEREEKFVTDEELHVVKQEVEKLEDEWEREELDKK
QKEKASLLEREEKPEWETGRYQLGMYPIQNMDKLQGEEEERLKREMLLAKLNEIDRELQDSRNLKYPVLP
LLPDFESKLHSPERSPKTYRFSESSERLFNGHHLQDISFSTPKGEGQNSGNVRSPASPNEFAFGSYVPSF
AKTSERSNPFSQKSSFLDFQRNSMEKLSKDGVDLITRKEKKANLMEQLFGASGSSTISSKSSDPNSVASS
KGDIDPLNFLPGNKGSRDQEHDEDEGFFLSEGRSFNPNRHRLKHADDKPAVKAADSVEDEIEEVALR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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