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Report for CCDS9015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9015.1 Public Homo sapiens 12 CSRP2 24 110 108 CCDS HistoryNCBI Gene:1466Re-query CCDS DB by CCDS ID:9015.1Re-query CCDS DB by GeneID:1466See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9015.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311083.10 ENSP00000310901.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311083.10Link to Ensembl Protein Viewer:ENSP00000310901.5Re-query CCDS DB by Nucleotide ID:ENST00000311083Re-query CCDS DB by Protein ID:ENSP00000310901
Original member Current member EBI ENST00000546966.5 ENSP00000450056.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546966.5Link to Ensembl Protein Viewer:ENSP00000450056.1Re-query CCDS DB by Nucleotide ID:ENST00000546966Re-query CCDS DB by Protein ID:ENSP00000450056
Original member Current member NCBI NM_001300965.2 NP_001287894.1 Accepted alive Link to Nucleotide Sequence:NM_001300965.2Link to Protein Sequence:NP_001287894.1Re-query CCDS DB by Nucleotide ID:NM_001300965Re-query CCDS DB by Protein ID:NP_001287894Link to BLAST:NP_001287894.1
Original member Current member NCBI NM_001321.3 NP_001312.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001321.3Link to Protein Sequence:NP_001312.1Re-query CCDS DB by Nucleotide ID:NM_001321Re-query CCDS DB by Protein ID:NP_001312Link to BLAST:NP_001312.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287894.1 193 Q16527 193 100% 0 0
NP_001312.1 193 Q16527 193 100% 0 0

Chromosomal Locations for CCDS 9015.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76858952 76859028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76859547 76859640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76860284 76860413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76863176 76863344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76866149 76866260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGCCTGTCTGGGGAGGTGGAAACAAGTGTGGGGCCTGTGGGAGGACCGTGTACCACGCAGAAGAGGTGC
AGTGTGATGGCAGGAGCTTCCACCGCTGCTGCTTTCTCTGCATGGTTTGCAGGAAAAATTTAGATAGCAC
AACAGTGGCAATTCACGATGAAGAGATCTACTGCAAATCCTGCTACGGAAAGAAGTATGGGCCAAAAGGC
TACGGTTATGGCCAGGGCGCTGGCACGCTTAACATGGACCGTGGCGAGAGGCTGGGCATCAAACCAGAGA
GTGTTCAGCCTCACAGGCCTACAACAAATCCAAACACTTCTAAATTTGCTCAGAAATATGGAGGTGCTGA
GAAGTGTTCCAGATGTGGGGATTCTGTATATGCTGCCGAGAAGATAATTGGAGCTGGAAAGCCCTGGCAC
AAAAACTGTTTCCGATGTGCAAAGTGTGGGAAGAGTCTTGAATCAACAACTCTGACTGAAAAAGAAGGTG
AAATCTATTGTAAAGGATGCTATGCAAAGAACTTTGGGCCCAAGGGATTTGGCTATGGCCAAGGAGCAGG
GGCTCTTGTTCATGCCCAGTAA

Translation (193 aa):
MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKG
YGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWH
KNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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