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Report for CCDS42113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42113.1 Public Homo sapiens 16 SRL 24 110 108 CCDS HistoryNCBI Gene:6345Re-query CCDS DB by CCDS ID:42113.1Re-query CCDS DB by GeneID:6345See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399609.7 ENSP00000382518.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399609.7Link to Ensembl Protein Viewer:ENSP00000382518.3Re-query CCDS DB by Nucleotide ID:ENST00000399609Re-query CCDS DB by Protein ID:ENSP00000382518
Original member Current member NCBI NM_001098814.2 NP_001092284.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098814.2Link to Protein Sequence:NP_001092284.1Re-query CCDS DB by Nucleotide ID:NM_001098814Re-query CCDS DB by Protein ID:NP_001092284Link to BLAST:NP_001092284.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092284.1 473 Q86TD4-2 473 100% 0 0

Chromosomal Locations for CCDS 42113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4192153 4192964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4195553 4195786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4197799 4197915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4203166 4203261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4204533 4204634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4242007 4242067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGAGGGCGCTGGTCCTGCTCGGCTGCCTCCTGGCCTCGCTCCTGTTCTCAGGACAAGCAGAAGAGACGG
AGGATGCAAATGAAGAAGCCCCATTGAGGGACCGCTCCCACATCGAGAAGACCCTCATGCTGAATGAGGA
CAAGCCATCCGATGACTACTCTGCGGTGCTGCAGCGGCTTCGGAAGATCTACCACTCATCCATCAAGCCT
CTGGAGCAGTCCTACAAGTACAATGAGCTCCGGCAGCATGAGATCACAGATGGAGAGATTACCTCCAAGC
CCATGGTACTGTTCCTGGGACCGTGGAGTGTTGGTAAATCTACCATGATAAACTACCTCCTTGGGCTGGA
AAATACTCGCTATCAGCTCTATACAGGCGCTGAACCCACCACCTCTGAGTTCACGGTCCTCATGCATGGG
CCTAAGCTGAAAACCATCGAGGGCATCGTCATGGCTGCTGACAGCGCCCGTTCCTTCTCACCCCTTGAGA
AGTTTGGCCAGAATTTCCTAGAGAAGCTGATTGGCATTGAGGTTCCCCACAAACTTCTGGAGAGGGTCAC
TTTTGTGGATACACCAGGCATCATCGAGAACCGCAAGCAGCAAGAAAGAGGCTACCCCTTCAACGACGTG
TGCCAGTGGTTCATCGACAGAGCTGACCTCATCTTTGTCGTCTTTGACCCAACAAAGCTGGATGTGGGTC
TAGAGCTGGAGATGCTCTTCCGCCAGTTGAAGGGGCGTGAATCCCAGATAAGGATCATCCTGAACAAGGC
TGACAATCTGGCCACCCAAATGCTCATGCGGGTTTACGGGGCCCTCTTCTGGAGCTTGGCCCCTCTCATC
AATGTCACAGAGCCCCCAAGGGTTTACGTCAGCTCCTTCTGGCCACAAGAGTATAAGCCGGACACCCATC
AGGAACTGTTCCTCCAAGAAGAGATCTCCCTCCTAGAAGACCTGAATCAGGTGATCGAGAACAGACTGGA
GAACAAGATTGCCTTCATCCGCCAGCACGCCATCCGGGTCCGCATCCACGCCCTCCTGGTTGACCGCTAC
CTGCAGACTTACAAGGACAAAATGACCTTCTTCAGTGATGGAGAACTGGTCTTTAAGGACATTGTGGAAG
ATCCCGATAAATTCTACATCTTCAAGACCATCCTGGCAAAGACCAATGTCAGCAAATTTGACCTTCCCAA
CCGCGAGGCCTATAAGGACTTCTTCGGCATCAATCCCATTTCCAGTTTCAAACTGCTCTCCCAGCAGTGC
TCCTACATGGGAGGTTGCTTTCTGGAGAAGATTGAGCGGGCCATCACTCAGGAGCTTCCGGGCCTCCTGG
GTAGCCTCGGGCTCGGGAAGAATCCAGGTGCTCTCAACTGTGACAAAACAGGGTGTAGCGAAACACCAAA
AAATCGCTACAGGAAGCACTAG

Translation (473 aa):
MRALVLLGCLLASLLFSGQAEETEDANEEAPLRDRSHIEKTLMLNEDKPSDDYSAVLQRLRKIYHSSIKP
LEQSYKYNELRQHEITDGEITSKPMVLFLGPWSVGKSTMINYLLGLENTRYQLYTGAEPTTSEFTVLMHG
PKLKTIEGIVMAADSARSFSPLEKFGQNFLEKLIGIEVPHKLLERVTFVDTPGIIENRKQQERGYPFNDV
CQWFIDRADLIFVVFDPTKLDVGLELEMLFRQLKGRESQIRIILNKADNLATQMLMRVYGALFWSLAPLI
NVTEPPRVYVSSFWPQEYKPDTHQELFLQEEISLLEDLNQVIENRLENKIAFIRQHAIRVRIHALLVDRY
LQTYKDKMTFFSDGELVFKDIVEDPDKFYIFKTILAKTNVSKFDLPNREAYKDFFGINPISSFKLLSQQC
SYMGGCFLEKIERAITQELPGLLGSLGLGKNPGALNCDKTGCSETPKNRYRKH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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