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Report for CCDS35006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35006.1 Public Homo sapiens 9 ARID3C 24 110 108 CCDS HistoryNCBI Gene:138715Re-query CCDS DB by CCDS ID:35006.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378909.4 ENSP00000368189.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378909.4Link to Ensembl Protein Viewer:ENSP00000368189.2Re-query CCDS DB by Nucleotide ID:ENST00000378909Re-query CCDS DB by Protein ID:ENSP00000368189
Original member Current member NCBI NM_001017363.4 NP_001017363.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017363.4Link to Protein Sequence:NP_001017363.1Re-query CCDS DB by Nucleotide ID:NM_001017363Re-query CCDS DB by Protein ID:NP_001017363Link to BLAST:NP_001017363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017363.1 412 A6NKF2 412 100% 0 0

Chromosomal Locations for CCDS 35006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34621458 34621558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34622020 34622109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34622347 34622529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34623425 34623714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34623864 34624047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34625742 34625814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34627697 34628014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGGAGGCCCTGCAGAAGCAGCAGGCAGCTCGGCTGGCCCAGGGGGTGGGGCCATTGGCCCCTGCATGCC
CGCTGCTGCCACCGCAGCCTCCCCTGCCTGACCACCGGACCCTACAGGCCCCTGAGGGGGCCTTGGGGAA
TGTTGGGGCTGAGGAAGAGGAAGATGCTGAAGAAGATGAGGAGAAGCGGGAGGAAGCCGGGGCAGAGGAG
GAGGCAGCTGAGGAGAGCCGTCCAGGGGCCCAGGGCCCCAGCTCGCCTTCTAGCCAGCCCCCTGGACTCC
ATCCCCACGAGTGGACCTACGAGGAACAATTCAAGCAGCTGTATGAGCTCGATGCAGACCCCAAGAGGAA
GGAATTTCTGGATGACCTGTTTAGCTTCATGCAAAAGAGGGGGACGCCAGTGAACCGCGTGCCCATCATG
GCGAAGCAGGTGCTCGACCTGTACGCTCTGTTTCGCCTGGTGACCGCCAAGGGCGGCCTGGTGGAAGTCA
TCAACCGCAAAGTGTGGCGGGAAGTCACGCGCGGCCTCAGCCTACCCACCACCATCACCTCGGCCGCCTT
CACTCTACGCACCCAGTACATGAAGTACCTGTACCCGTACGAGTGCGAGACTCGAGCGCTCAGCTCCCCA
GGGGAGCTCCAGGCCGCCATAGACAGCAATCGGCGCGAGGGCCGTCGCCAGGCTTACACCGCTACTCCGC
TCTTCGGCTTGGCAGGGCCGCCCCCTCGGGGCGCTCAGGACCCAGCCTTGGGTCCCGGCCCCGCCCCTCC
GGCGACCCAGTCCAGCCCTGGCCCAGCCCAGGGTTCCACCTCCGGCCTGCCAGCGCATGCATGCGCTCAG
CTGAGTCCAAGCCCTATTAAGAAAGAGGAGAGTGGAATTCCAAACCCTTGTCTGGCACTGCCTGTGGGCC
TGGCACTGGGACCTACACGGGAGAAATTGGCACCAGAGGAGCCCCCAGAGAAGAGAGCTGTGCTGATGGG
GCCTATGGACCCACCTCGACCTTGCATGCCCCCCAGTTTCCTGCCCCGTGGCAAGGTTCCCCTGAGGGAA
GAGCGGCTGGATGGGCCTCTTAATCTGGCAGGCAGTGGCATCAGCAGTATCAACATGGCCCTAGAGATCA
ACGGGGTGGTCTACACTGGTGTCCTCTTTGCCCGCCGCCAGCCTGTGCCAGCTTCCCAGGGTCCAACCAA
CCCTGCACCCCCACCCTCCACAGGGCCCCCTTCCAGCATCTTGCCCTGA

Translation (412 aa):
MEALQKQQAARLAQGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAEEEEDAEEDEEKREEAGAEE
EAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIM
AKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSP
GELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQ
LSPSPIKKEESGIPNPCLALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLRE
ERLDGPLNLAGSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPPSSILP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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