NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9411.1 Public Homo sapiens 13 RCBTB2 24 110 108 CCDS HistoryNCBI Gene:1102Re-query CCDS DB by CCDS ID:9411.1Re-query CCDS DB by GeneID:1102See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344532.8 ENSP00000345144.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344532.8Link to Ensembl Protein Viewer:ENSP00000345144.3Re-query CCDS DB by Nucleotide ID:ENST00000344532Re-query CCDS DB by Protein ID:ENSP00000345144
Original member Current member NCBI NM_001268.4 NP_001259.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001268.4Link to Protein Sequence:NP_001259.1Re-query CCDS DB by Nucleotide ID:NM_001268Re-query CCDS DB by Protein ID:NP_001259Link to BLAST:NP_001259.1
Original member Current member NCBI NM_001352424.2 NP_001339353.1 Accepted alive Link to Nucleotide Sequence:NM_001352424.2Link to Protein Sequence:NP_001339353.1Re-query CCDS DB by Nucleotide ID:NM_001352424Re-query CCDS DB by Protein ID:NP_001339353Link to BLAST:NP_001339353.1
Original member Current member NCBI NM_001352425.2 NP_001339354.1 Accepted alive Link to Nucleotide Sequence:NM_001352425.2Link to Protein Sequence:NP_001339354.1Re-query CCDS DB by Nucleotide ID:NM_001352425Re-query CCDS DB by Protein ID:NP_001339354Link to BLAST:NP_001339354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001259.1 551 O95199-1 551 100% 0 0
NP_001339353.1 551 O95199-1 551 100% 0 0
NP_001339354.1 551 O95199-1 551 100% 0 0

Chromosomal Locations for CCDS 9411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48490111 48490251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48496191 48496321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48499621 48499760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48501742 48501868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48502724 48502914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48510629 48510771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48511770 48511877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48512016 48512174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48512729 48512895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48515205 48515355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48515586 48515741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48521898 48521939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGAAGAAGAACTTCCTCTTTTCTCTGGAGACAGTGGCAAGCCAGTACAGGCTACTCTGTCATCTTTGA
AGATGTTAGATGTGGGAAAGTGGCCAATTTTTTCCCTTTGTTCTGAAGAAGAACTACAGTTAATTCGTCA
GGCTTGTGTCTTTGGCAGTGCTGGCAATGAAGTTTTATACACTACAGTAAATGATGAGATTTTTGTGCTT
GGCACAAACTGCTGTGGCTGTTTGGGGTTAGGTGACGTCCAGAGCACCATTGAACCTCGGAGACTGGATT
CTTTAAATGGCAAAAAAATAGCCTGCCTCAGCTATGGGAGTGGTCCACATATTGTCCTTGCAACAACAGA
AGGAGAAGTCTTTACCTGGGGTCATAATGCTTATAGCCAGCTGGGCAATGGGACAACTAATCATGGTTTA
GTGCCCTGTCATATCTCTACTAATCTGTCAAACAAACAAGTCATTGAAGTTGCCTGTGGGTCTTACCATT
CTTTGGTGCTAACATCTGATGGAGAGGTATTTGCCTGGGGTTATAATAACTCTGGGCAGGTAGGATCTGG
ATCAACAGTTAATCAGCCAATCCCTCGAAGAGTCACTGGCTGCCTACAAAATAAAGTAGTTGTGACCATA
GCATGTGGGCAGATGTGCTGCATGGCAGTAGTAGACACGGGGGAGGTCTATGTCTGGGGTTACAACGGAA
ACGGGCAGCTTGGACTCGGCAACAGTGGCAACCAGCCAACCCCTTGCAGAGTGGCAGCTTTGCAAGGCAT
CCGTGTCCAGAGGGTCGCCTGTGGCTACGCACACACATTAGTATTAACAGATGAAGGCCAAGTGTATGCT
TGGGGCGCCAATTCTTATGGGCAGTTGGGCACTGGCAATAAAAGCAACCAGTCCTATCCTACTCCTGTCA
CTGTGGAAAAGGACAGGATTATCGAGATTGCAGCCTGTCACTCCACACACACGTCTGCGGCCAAGACGCA
GGGTGGGCACGTGTACATGTGGGGCCAGTGCCGGGGTCAGTCCGTGATCCTCCCGCACCTCACCCACTTC
TCCTGCACTGACGACGTGTTTGCCTGCTTTGCCACGCCCGCCGTCACGTGGCGCCTCCTCTCCGTGGAAC
CTGATGACCACCTCACAGTGGCTGAGTCACTGAAGAGGGAATTTGACAACCCGGACACTGCAGACCTGAA
GTTTCTAGTTGATGGAAAGTACATTTATGCACATAAAGTCCTTCTCAAGATTCGATGTGAGCATTTTCGT
TCGTCATTGGAAGATAACGAGGATGATATTGTAGAAATGAGTGAATTTTCATATCCTGTTTACCGGGCCT
TCCTGGAATACCTATACACAGACAGCATCAGCCTTTCTCCTGAGGAGGCAGTAGGACTGCTAGACTTGGC
TACATTTTATAGAGAAAATCGTTTGAAAAAGCTCTGCCAACAAACTATCAAGCAAGGCATCTGCGAGGAG
AATGCCATCGCTCTGCTCTCGGCTGCGGTGAAGTATGATGCACAGGATTTAGAAGAATTCTGCTTCAGGT
TTTGCATAAACCATCTGACTGTAGTAACACAAACATCAGGTTTTGCAGAAATGGACCATGATCTCCTGAA
GAACTTTATCAGCAAAGCAAGCAGAGTTGGAGCCTTTAAAAATTGA

Translation (551 aa):
MEEELPLFSGDSGKPVQATLSSLKMLDVGKWPIFSLCSEEELQLIRQACVFGSAGNEVLYTTVNDEIFVL
GTNCCGCLGLGDVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGL
VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTI
ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYA
WGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHF
SCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFR
SSLEDNEDDIVEMSEFSYPVYRAFLEYLYTDSISLSPEEAVGLLDLATFYRENRLKKLCQQTIKQGICEE
NAIALLSAAVKYDAQDLEEFCFRFCINHLTVVTQTSGFAEMDHDLLKNFISKASRVGAFKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH