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Report for CCDS7647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7647.1 Public Homo sapiens 10 MMP21 24 110 108 CCDS HistoryNCBI Gene:118856Re-query CCDS DB by CCDS ID:7647.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368808.3 ENSP00000357798.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368808.3Link to Ensembl Protein Viewer:ENSP00000357798.3Re-query CCDS DB by Nucleotide ID:ENST00000368808Re-query CCDS DB by Protein ID:ENSP00000357798
Original member Current member NCBI NM_147191.1 NP_671724.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_147191.1Link to Protein Sequence:NP_671724.1Re-query CCDS DB by Nucleotide ID:NM_147191Re-query CCDS DB by Protein ID:NP_671724Link to BLAST:NP_671724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671724.1 569 Q8N119 569 100% 0 0

Chromosomal Locations for CCDS 7647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 125766662 125766961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125767532 125767704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125770334 125770591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125772218 125772359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125772611 125772750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125773831 125774365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125775660 125775821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGCTCGCCGCCTCCATCTTCCGTCCGACACTGCTGCTCTGCTGGCTGGCTGCTCCCTGGCCCACCCAGC
CC
GAGAGTCTCTTCCACAGCCGGGACCGCTCGGACCTGGAGCCGTCCCCACTGCGCCAGGCCAAGCCCAT
T
GCCGACCTCCACGCTGCTCAGCGGTTCCTGTCCAGATACGGCTGGTCAGGGGTGTGGGCGGCCTGGGGG
CCC
AGTCCCGAGGGGCCGCCGGAGACCCCCAAGGGCGCCGCCCTGGCCGAGGCGGTGCGCAGGTTCCAGC
GG
GCGAACGCGCTGCCGGCCAGCGGGGAGCTGGACGCGGCCACCCTAGCGGCCATGAACCGGCCGCGCTG
C
GGGGTCCCGGACATGCGCCCACCGCCCCCCTCCGCCCCGCCTTCGCCCCCGGGCCCGCCCCCCAGAGCC
CGC
TCCAGGCGCTCCCCGCGGGCGCCGCTGTCCTTGTCCCGGCGGGGTTGGCAGCCCCGGGGCTACCCCG
AC
GGCGGAGCTGCCCAGGCCTTCTCCAAGAGGACGCTGAGCTGGCGGCTGCTGGGCGAGGCCCTGAGCAG
C
CAACTGTCCGTGGCCGACCAGCGGCGCATTGTGGCGCTGGCCTTCAGGATGTGGAGCGAGGTGACGCCG
CTG
GACTTCCGCGAGGACCTGGCCGCCCCCGGGGCCGCGGTCGACATCAAGCTGGGCTTTGGGAGAGGCC
GG
CACCTGGGCTGTCCGCGGGCCTTCGATGGGAGCGGGCAGGAGTTTGCACACGCCTGGCGCCTAGGTGA
C
ATTCACTTTGACGACGACGAGCACTTCACACCTCCCACCAGTGACACGGGCATCAGCCTTCTCAAGGTG
GCC
GTCCATGAAATTGGCCATGTCCTGGGCTTGCCTCACACCTACAGGACGGGATCCATAATGCAACCAA
AT
TACATTCCCCAGGAGCCTGCCTTTGAGTTGGACTGGTCAGACAGGAAAGCAATTCAAAAGCTGTATGG
C
TCCTGTGAGGGATCATTTGATACTGCGTTTGACTGGATTCGCAAAGAGAGAAACCAATATGGAGAGGTG
ATG
GTGAGATTTAGCACATATTTCTTCCGTAACAGCTGGTACTGGCTTTATGAAAATCGAAACAATAGGA
CA
CGCTATGGGGACCCTATCCAAATCCTCACTGGCTGGCCTGGAATCCCAACACACAACATAGATGCCTT
T
GTTCACATCTGGACATGGAAAAGAGATGAACGTTATTTTTTTCAAGGAAATCAATACTGGAGATATGAC
AGT
GACAAGGATCAGGCCCTCACAGAAGATGAACAAGGAAAAAGCTATCCCAAATTGATTTCAGAAGGAT
TT
CCTGGCATCCCAAGTCCCCTAGACACGGCGTTTTATGACCGAAGACAGAAGTTAATTTACTTCTTCAA
G
GAGTCCCTTGTATTTGCATTTGATGTCAACAGAAATCGAGTACTTAATTCTTATCCAAAGAGGATTACT
GAA
GTTTTTCCAGCAGTAATACCACAAAATCATCCTTTCAGAAATATAGATTCCGCTTATTACTCCTATG
CA
TACAACTCCATTTTCTTTTTCAAAGGCAATGCATACTGGAAGGTAGTTAATGACAAGGACAAACAACA
G
AATTCCTGGCTTCCTGCTAATGGCTTATTTCCAAAAAAGTTTATTTCAGAGAAGTGGTTTGATGTTTGT
GAC
GTCCATATCTCCACACTGAACATGTAA


Translation (569 aa):
MLAASIFRPTLLLCWLAAPWPTQPESLFHSRDRSDLEPSPLRQAKPIADLHAAQRFLSRYGWSGVWAAWG
P
SPEGPPETPKGAALAEAVRRFQRANALPASGELDAATLAAMNRPRCGVPDMRPPPPSAPPSPPGPPPRA
R
SRRSPRAPLSLSRRGWQPRGYPDGGAAQAFSKRTLSWRLLGEALSSQLSVADQRRIVALAFRMWSEVTP
L
DFREDLAAPGAAVDIKLGFGR
GRHLGCPRAFDGSGQEFAHAWRLGDIHFDDDEHFTPPTSDTGISLLKV
A
VHEIGHVLGLPHTYRTGSIMQPNYIPQEPAFELDWSDRKAIQKLY
GSCEGSFDTAFDWIRKERNQYGEV
M
VRFSTYFFRNSWYWLYENRNNRTRYGDPIQILTGWPGIPTHNIDAFVHIWTWKRDERYFFQ
GNQYWRYD
S
DKDQALTEDEQGKSYPKLISEGFPGIPSPLDTAFYDRRQKLIYFFKESL
VFAFDVNRNRVLNSYPKRIT
E
VFPAVIPQNHPFRNIDSAYYSYAYNSIFFFKGNAYWKVVNDKDKQQNSWLPANGLFPKKFISEKWFDVC
D
VHISTLNM




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 Genome Browser Links:   Ensembl Genome Browser
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