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Report for CCDS4304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4304.1 Public Homo sapiens 5 CDX1 24 110 108 CCDS HistoryNCBI Gene:1044Re-query CCDS DB by CCDS ID:4304.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4304.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231656.13 ENSP00000231656.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231656.13Link to Ensembl Protein Viewer:ENSP00000231656.7Re-query CCDS DB by Nucleotide ID:ENST00000231656Re-query CCDS DB by Protein ID:ENSP00000231656
Original member Current member NCBI NM_001804.3 NP_001795.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001804.3Link to Protein Sequence:NP_001795.2Re-query CCDS DB by Nucleotide ID:NM_001804Re-query CCDS DB by Protein ID:NP_001795Link to BLAST:NP_001795.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001795.2 265 P47902-1 265 100% 0 0

Chromosomal Locations for CCDS 4304.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150166877 150167321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150182768 150182913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150183474 150183680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGTATGTGGGCTATGTGCTGGACAAGGATTCGCCCGTGTACCCCGGCCCAGCCAGGCCAGCCAGCCTCG
GCCTGGGCCCGCAAGCCTACGGCCCCCCGGCCCCGCCCCCGGCGCCCCCGCAGTACCCCGACTTCTCCAG
CTACTCTCACGTGGAGCCGGCCCCCGCGCCCCCGACGGCCTGGGGGGCGCCCTTCCCTGCGCCCAAGGAC
GACTGGGCCGCCGCCTACGGCCCGGGCCCCGCGGCCCCTGCCGCCAGCCCAGCTTCGCTGGCATTCGGGC
CCCCTCCAGACTTTAGCCCGGTGCCGGCGCCCCCTGGGCCCGGCCCGGGCCTCCTGGCGCAGCCCCTCGG
GGGCCCGGGCACACCGTCCTCGCCCGGAGCGCAGAGGCCGACGCCCTACGAGTGGATGCGGCGCAGCGTG
GCGGCCGGAGGCGGCGGTGGCAGCGGTAAGACTCGGACCAAGGACAAGTACCGCGTGGTCTACACCGACC
ACCAACGCCTGGAGCTGGAGAAGGAGTTTCATTACAGCCGTTACATCACAATCCGGCGGAAATCAGAGCT
GGCTGCCAATCTGGGGCTCACTGAACGGCAGGTGAAGATCTGGTTCCAAAACCGGCGGGCAAAGGAGCGC
AAAGTGAACAAGAAGAAACAGCAGCAGCAACAGCCCCCACAGCCGCCGATGGCCCACGACATCACGGCCA
CCCCAGCCGGGCCATCCCTGGGGGGCCTGTGTCCCAGCAACACCAGCCTCCTGGCCACCTCCTCTCCAAT
GCCTGTGAAAGAGGAGTTTCTGCCATAG

Translation (265 aa):
MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKD
DWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSV
AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKER
KVNKKKQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEFLP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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