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Report for CCDS94489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94489.1 Public Homo sapiens 9 STXBP1 24 110 108 CCDS HistoryNCBI Gene:6812Re-query CCDS DB by CCDS ID:94489.1Re-query CCDS DB by GeneID:6812See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94489.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000626539.3 ENSP00000487211.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000626539.3Link to Ensembl Protein Viewer:ENSP00000487211.2Re-query CCDS DB by Nucleotide ID:ENST00000626539Re-query CCDS DB by Protein ID:ENSP00000487211
Original member Current member EBI ENST00000637173.2 ENSP00000490519.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637173.2Link to Ensembl Protein Viewer:ENSP00000490519.1Re-query CCDS DB by Nucleotide ID:ENST00000637173Re-query CCDS DB by Protein ID:ENSP00000490519
Original member Current member EBI ENST00000704680.1 ENSP00000515991.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704680.1Link to Ensembl Protein Viewer:ENSP00000515991.1Re-query CCDS DB by Nucleotide ID:ENST00000704680Re-query CCDS DB by Protein ID:ENSP00000515991
Original member Current member NCBI NM_001374309.2 NP_001361238.1 Accepted alive Link to Nucleotide Sequence:NM_001374309.2Link to Protein Sequence:NP_001361238.1Re-query CCDS DB by Nucleotide ID:NM_001374309Re-query CCDS DB by Protein ID:NP_001361238Link to BLAST:NP_001361238.1
Original member Current member NCBI NM_001374310.2 NP_001361239.1 Accepted alive Link to Nucleotide Sequence:NM_001374310.2Link to Protein Sequence:NP_001361239.1Re-query CCDS DB by Nucleotide ID:NM_001374310Re-query CCDS DB by Protein ID:NP_001361239Link to BLAST:NP_001361239.1
Original member Current member NCBI NM_001374311.2 NP_001361240.1 Accepted alive Link to Nucleotide Sequence:NM_001374311.2Link to Protein Sequence:NP_001361240.1Re-query CCDS DB by Nucleotide ID:NM_001374311Re-query CCDS DB by Protein ID:NP_001361240Link to BLAST:NP_001361240.1
Original member Current member NCBI NM_001374312.2 NP_001361241.1 Accepted alive Link to Nucleotide Sequence:NM_001374312.2Link to Protein Sequence:NP_001361241.1Re-query CCDS DB by Nucleotide ID:NM_001374312Re-query CCDS DB by Protein ID:NP_001361241Link to BLAST:NP_001361241.1

Chromosomal Locations for CCDS 94489.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 127651608 127651652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127653715 127653796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127658375 127658451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127660030 127660108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127661102 127661205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127663205 127663353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127665247 127665331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127666166 127666296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127668080 127668187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127669898 127669958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127672051 127672116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127673181 127673261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127675804 127675942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127676644 127676753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127678431 127678532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127680157 127680242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127682406 127682560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127690775 127690857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGCATGATGTGATAAAGAAGGTCAAGAAGAAGGGGGAATGGAAGGTGCTGGTGGTGGATCAGTTAAGCA
TGAGGATGCTGTCCTCCTGCTGCAAGATGACAGACATCATGACCGAGGGCATAACGATTGTGGAAGATAT
CAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCTGTGTATCTCATCACTCCATCCGAGAAGTCCGTC
CACTCTCTCATCAGTGACTTTAAGGACCCGCCGACTGCTAAATACCGGGCTGCACACGTCTTCTTCACTG
ACTCTTGTCCAGATGCCCTGTTTAATGAACTGGTAAAATCCCGAGCAGCCAAAGTCATCAAAACTCTGAC
GGAAATCAATATTGCATTTCTCCCGTATGAATCCCAGGTCTATTCCTTGGACTCTGCTGACTCTTTCCAA
AGCTTCTACAGTCCCCACAAGGCTCAGATGAAGAATCCTATACTGGAGCGCCTGGCAGAGCAGATCGCGA
CCCTTTGTGCCACCCTGAAGGAGTACCCGGCTGTGCGGTATCGGGGGGAATACAAGGACAATGCCCTGCT
GGCTCAGCTAATCCAGGACAAGCTCGATGCCTATAAAGCTGATGATCCAACAATGGGGGAGGGCCCAGAC
AAGGCACGCTCCCAGCTCCTGATCCTGGATCGAGGCTTTGACCCCAGCTCCCCTGTGCTCCATGAATTGA
CTTTTCAGGCTATGAGTTATGATCTGCTGCCTATCGAAAATGATGTATACAAGTATGAGACCAGCGGCAT
CGGGGAGGCACGGGTGAAGGAGGTGCTCCTGGACGAGGACGACGACCTGTGGATAGCACTGCGCCACAAG
CACATCGCAGAGGTGTCCCAGGAAGTCACCCGGTCTCTGAAAGATTTTTCTTCTAGCAAGAGAATGAATA
CTGGAGAGAAGACCACCATGCGGGACCTGTCCCAGATGCTGAAGAAGATGCCTCAGTACCAGAAAGAGCT
CAGCAAGTACTCCACCCACCTGCACCTTGCTGAGGACTGTATGAAGCATTACCAAGGCACCGTAGACAAA
CTCTGCCGAGTGGAGCAGGACCTGGCCATGGGCACAGATGCTGAGGGAGAGAAGATCAAGGACCCTATGC
GAGCCATCGTCCCCATTCTGCTGGATGCCAATGTCAGCACTTATGACAAAATCCGCATCATCCTTCTCTA
CATCTTTTTGAAGAATGGCATCACGGAGGAAAACCTGAACAAACTGATCCAGCACGCCCAGATACCCCCG
GAGGATAGTGAGATCATCACCAACATGGCTCACCTCGGCGTGCCCATCGTCACCGATTCCACGCTGCGTC
GCCGGAGCAAGCCGGAGCGGAAGGAACGCATCAGCGAGCAGACCTACCAGCTCTCACGGTGGACTCCGAT
TATCAAGGACATCATGGAGGACACTATTGAGGACAAACTTGACACCAAACACTACCCTTATATCTCTACC
CGTTCCTCTGCCTCCTTCAGCACCACCGCCGTCAGCGCCCGCTATGGGCACTGGCATAAGAACAAGGCCC
CAGGCGAGTACCGCAGTGGCCCCCGCCTCATCATTTTCATCCTTGGGGGTGTGAGCCTGAATGAGATGCG
CTGCGCCTACGAGGTGACCCAGGCCAACGGAAAGTGGGAGGTGCTGATAGGATCCACACACATCCTCACC
CCACAGAAACTGCTGGACACACTGAAGAAACTGAATAAAACAGATGAAGAAATAAGCAGTTAA

Translation (580 aa):
MHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSV
HSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQ
SFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPD
KARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDDLWIALRHK
HIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDK
LCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQHAQIPP
EDSEIITNMAHLGVPIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYIST
RSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILT
PQKLLDTLKKLNKTDEEISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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