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Report for CCDS42281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42281.1 Public Homo sapiens 17 SPECC1 24 110 108 CCDS HistoryNCBI Gene:92521Re-query CCDS DB by CCDS ID:42281.1Re-query CCDS DB by GeneID:92521See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42281.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395530.6 ENSP00000378901.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395530.6Link to Ensembl Protein Viewer:ENSP00000378901.2Re-query CCDS DB by Nucleotide ID:ENST00000395530Re-query CCDS DB by Protein ID:ENSP00000378901
Original member Current member NCBI NM_001033555.3 NP_001028727.1 Accepted alive Link to Nucleotide Sequence:NM_001033555.3Link to Protein Sequence:NP_001028727.1Re-query CCDS DB by Nucleotide ID:NM_001033555Re-query CCDS DB by Protein ID:NP_001028727Link to BLAST:NP_001028727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028727.1 987 Q5M775-4 987 100% 0 0

Chromosomal Locations for CCDS 42281.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20156197 20156236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20204333 20205912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20227413 20227620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20231758 20231831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20232200 20232405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20245926 20246071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20247219 20247319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20253505 20253586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20257451 20257607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20260192 20260294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20296961 20297077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20306023 20306082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20313976 20314065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2964 nt):
ATGGGCAACCACTCAGGACGGCCCGAGGATCCGGAACCAGGGGCCTTTACAACAACTAAACGGACAGGCA
TTCCAGCCCCACGGGAATTTTCAGTAACTGTCTCAAGAGAGAGGTCTGTGCCACGTGGTCCCTCCAACCC
CAGGAAATCAGTGTCCAGTCCAACTTCTTCCAACACTCCCACTCCTACGAAACACCTGAGGACCCCTTCC
ACAAAGCCCAAGCAAGAGAATGAAGGTGGAGAAAAGGCTGCGCTTGAGTCCCAAGTTCGGGAACTTTTGG
CAGAAGCCAAAGCAAAAGATAGTGAAATTAACAGGCTTCGAAGTGAACTAAAGAAATACAAAGAGAAAAG
GACTCTGAACGCTGAGGGGACTGATGCTTTGGGCCCAAATGTCGATGGAACATCAGTCTCCCCAGGTGAC
ACGGAACCTATGATAAGAGCTCTTGAGGAGAAGAACAAGAACTTTCAGAAAGAGCTTTCCGATCTAGAGG
AAGAAAACCGGGTCCTGAAGGAGAAACTGATCTATCTTGAGCACTCCCCAAATTCAGAAGGGGCAGCAAG
TCACACTGGCGACAGCAGCTGCCCAACATCCATAACTCAAGAGTCAAGCTTCGGAAGCCCAACTGGAAAT
CAGATGTCCAGTGACATTGATGAGTATAAAAAAAACATACATGGAAATGCATTACGGACATCAGGCTCCT
CAAGTAGCGATGTTACCAAAGCTTCTTTGTCGCCAGATGCTTCCGACTTTGAGCACATTACAGCAGAGAC
ACCCTCAAGGCCCCTGTCCTCCACCAGTAACCCCTTTAAGAGTTCAAAGTGTTCTACTGCTGGGAGTTCC
CCAAACAGCGTAAGTGAATTGTCCCTGGCTTCCCTCACAGAGAAGATACAAAAGATGGAAGAAAACCACC
ATAGCACTGCAGAAGAACTACAGGCTACTCTACAAGAATTATCAGACCAGCAACAAATGGTACAGGAATT
GACAGCTGAAAATGAGAAGCTGGTGGATGAAAAGACGATTTTAGAGACATCCTTTCATCAGCATCGAGAG
AGGGCAGAGCAGCTAAGTCAAGAAAATGAGAAGCTGATGAATCTTTTACAAGAGCGAGTAAAGAATGAAG
AGCCCACCACTCAGGAAGGAAAAATTATTGAACTGGAGCAGAAGTGCACAGGTATTCTTGAACAGGGCCG
CTTTGAAAGAGAGAAGCTACTCAACATTCAGCAGCAGTTGACCTGTAGCTTGCGGAAGGTTGAGGAAGAA
AACCAAGGAGCTTTAGAAATGATTAAACGTCTGAAGGAAGAAAATGAAAAACTGAATGAGTTTCTAGAAC
TGGAACGGCATAATAATAACATGATGGCCAAAACTTTGGAAGAGTGTAGAGTTACCTTGGAAGGGCTAAA
AATGGAGAATGGATCTTTGAAGTCTCATTTGCAGGGTGAGAAGCAGAAAGCCACAGAGGCCAGTGCTGTG
GAGCAGACGGCAGAGAGCTGCGAAGTTCAAGAAATGTTGAAAGTAGCCCGAGCAGAGAAAGATCTACTGG
AACTGTCTTGCAATGAGCTCAGACAAGAATTACTAAAGGCAAACGGTGAAATTAAACATGTTTCCAGTCT
GCTGGCCAAGGTGGAAAAGGATTATTCATACCTGAAGGAGATATGTGATCACCAAGCCGAACAGCTGAGC
AGAACCAGCCTAAAGCTGCAAGAAAAAGCATCAGAGAGTGATGCAGAGATCAAAGACATGAAAGAAACCA
TATTTGAATTGGAAGATCAGGTGGAACAGCACCGGGCTGTCAAGTTACACAATAATCAACTCATCAGTGA
GCTAGAAAGTAGTGTGATCAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGAAGACTCTGACC
AAGCAGATGAAGGAGGAGACCGAGGAATGGAGGCGGTTCCAGGCGGATCTGCAGACCGCAGTGGTGGTGG
CCAATGACATCAAGTGTGAGGCCCAGCAGGAGCTGCGCACCGTGAAGAGGAAACTGCTGGAGGAGGAGGA
GAAGAATGCCCGGTTGCAGAAGGAGCTGGGGGATGTGCAGGGCCACGGCAGGGTGGTCACCAGCAGAGCC
GCCCCTCCACCTGTGGATGAAGAGCCAGAGTCCTCTGAGGTCGATGCTGCTGGTCGGTGGCCTGGTGTCT
GTGTTAGCAGAACATCTCCAACACCCCCAGAGTCGGCAACCACCGTTAAGTCACTTATCAAGTCATTTGA
CTTGGGACGCCCAGGTGGAGCTGGACAGAATATTTCTGTCCATAAGACCCCCAGAAGTCCCCTAAGTGGG
ATACCAGTGAGGACTGCTCCAGCAGCTGCTGTCTCTCCAATGCAGAGGCATTCGACTTACAGCAGTGTGC
GGCCAGCCAGCAGAGGGGTGACTCAACGCTTGGACCTTCCTGACCTTCCCCTCTCAGATATTCTAAAGGG
AAGGACTGAGACCCTGAAGCCAGACCCCCACCTCCGCAAGAGTCCCTCACTAGAGTCACTGAGCAGACCC
CCGTCTCTGGGCTTTGGGGACACAAGACTGCTGAGTGCTTCCACCCGGGCATGGAAACCACAAAGCAAAC
TCAGTGTGGAAAGAAAAGACCCTCTGGCAGCCTTGGCCCGGGAATACGGTGGTTCCAAGCGCAATGCTCT
ACTGAAATGGTGCCAGAAGAAGACACAAGGTTATGCGAACATTGACATCACCAATTTCAGCAGCAGCTGG
AGCGATGGCCTGGCCTTCTGTGCTCTGCTCCACACCTACCTGCCTGCCCACATCCCCTACCAGGAGCTGA
ATAGTCAGGAGAAAAAGAGGAATCTCTTGTTGGCATTTGAAGCGGCTGAAAGTGTAGGCATCAAACCCAG
CCTGGAACTCAGCGAGATGCTGTACACAGACCGGCCCGACTGGCAGAGTGTGATGCAGTACGTGGCCCAA
ATCTACAAGTACTTTGAGACGTAA

Translation (987 aa):
MGNHSGRPEDPEPGAFTTTKRTGIPAPREFSVTVSRERSVPRGPSNPRKSVSSPTSSNTPTPTKHLRTPS
TKPKQENEGGEKAALESQVRELLAEAKAKDSEINRLRSELKKYKEKRTLNAEGTDALGPNVDGTSVSPGD
TEPMIRALEEKNKNFQKELSDLEEENRVLKEKLIYLEHSPNSEGAASHTGDSSCPTSITQESSFGSPTGN
QMSSDIDEYKKNIHGNALRTSGSSSSDVTKASLSPDASDFEHITAETPSRPLSSTSNPFKSSKCSTAGSS
PNSVSELSLASLTEKIQKMEENHHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKTILETSFHQHRE
RAEQLSQENEKLMNLLQERVKNEEPTTQEGKIIELEQKCTGILEQGRFEREKLLNIQQQLTCSLRKVEEE
NQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLKSHLQGEKQKATEASAV
EQTAESCEVQEMLKVARAEKDLLELSCNELRQELLKANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLS
RTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESSVIKLEEQKSDLERQLKTLT
KQMKEETEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNARLQKELGDVQGHGRVVTSRA
APPPVDEEPESSEVDAAGRWPGVCVSRTSPTPPESATTVKSLIKSFDLGRPGGAGQNISVHKTPRSPLSG
IPVRTAPAAAVSPMQRHSTYSSVRPASRGVTQRLDLPDLPLSDILKGRTETLKPDPHLRKSPSLESLSRP
PSLGFGDTRLLSASTRAWKPQSKLSVERKDPLAALAREYGGSKRNALLKWCQKKTQGYANIDITNFSSSW
SDGLAFCALLHTYLPAHIPYQELNSQEKKRNLLLAFEAAESVGIKPSLELSEMLYTDRPDWQSVMQYVAQ
IYKYFET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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