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Report for CCDS45362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45362.1 Public Homo sapiens 15 MEF2A 24 110 108 CCDS HistoryNCBI Gene:4205Re-query CCDS DB by CCDS ID:45362.1Re-query CCDS DB by GeneID:4205See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45362.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354410.9 ENSP00000346389.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354410.9Link to Ensembl Protein Viewer:ENSP00000346389.5Re-query CCDS DB by Nucleotide ID:ENST00000354410Re-query CCDS DB by Protein ID:ENSP00000346389
Original member Current member NCBI NM_001352617.4 NP_001339546.1 Accepted alive Link to Nucleotide Sequence:NM_001352617.4Link to Protein Sequence:NP_001339546.1Re-query CCDS DB by Nucleotide ID:NM_001352617Re-query CCDS DB by Protein ID:NP_001339546Link to BLAST:NP_001339546.1
Original member Current member NCBI NM_001365207.3 NP_001352136.1 Accepted alive Link to Nucleotide Sequence:NM_001365207.3Link to Protein Sequence:NP_001352136.1Re-query CCDS DB by Nucleotide ID:NM_001365207Re-query CCDS DB by Protein ID:NP_001352136Link to BLAST:NP_001352136.1
Original member Current member NCBI NM_001400038.1 NP_001386967.1 Accepted alive Link to Nucleotide Sequence:NM_001400038.1Link to Protein Sequence:NP_001386967.1Re-query CCDS DB by Nucleotide ID:NM_001400038Re-query CCDS DB by Protein ID:NP_001386967Link to BLAST:NP_001386967.1
Original member Current member NCBI NM_001400039.1 NP_001386968.1 Accepted alive Link to Nucleotide Sequence:NM_001400039.1Link to Protein Sequence:NP_001386968.1Re-query CCDS DB by Nucleotide ID:NM_001400039Re-query CCDS DB by Protein ID:NP_001386968Link to BLAST:NP_001386968.1
Original member Current member NCBI NM_001400040.1 NP_001386969.1 Accepted alive Link to Nucleotide Sequence:NM_001400040.1Link to Protein Sequence:NP_001386969.1Re-query CCDS DB by Nucleotide ID:NM_001400040Re-query CCDS DB by Protein ID:NP_001386969Link to BLAST:NP_001386969.1
Original member Current member NCBI NM_001400049.1 NP_001386978.1 Accepted alive Link to Nucleotide Sequence:NM_001400049.1Link to Protein Sequence:NP_001386978.1Re-query CCDS DB by Nucleotide ID:NM_001400049Re-query CCDS DB by Protein ID:NP_001386978Link to BLAST:NP_001386978.1
Original member Current member NCBI NM_001400050.1 NP_001386979.1 Accepted alive Link to Nucleotide Sequence:NM_001400050.1Link to Protein Sequence:NP_001386979.1Re-query CCDS DB by Nucleotide ID:NM_001400050Re-query CCDS DB by Protein ID:NP_001386979Link to BLAST:NP_001386979.1
Original member Current member NCBI NM_001400051.1 NP_001386980.1 Accepted alive Link to Nucleotide Sequence:NM_001400051.1Link to Protein Sequence:NP_001386980.1Re-query CCDS DB by Nucleotide ID:NM_001400051Re-query CCDS DB by Protein ID:NP_001386980Link to BLAST:NP_001386980.1
Original member Current member NCBI NM_001400052.1 NP_001386981.1 Accepted alive Link to Nucleotide Sequence:NM_001400052.1Link to Protein Sequence:NP_001386981.1Re-query CCDS DB by Nucleotide ID:NM_001400052Re-query CCDS DB by Protein ID:NP_001386981Link to BLAST:NP_001386981.1
Original member Current member NCBI NM_001400053.1 NP_001386982.1 Accepted alive Link to Nucleotide Sequence:NM_001400053.1Link to Protein Sequence:NP_001386982.1Re-query CCDS DB by Nucleotide ID:NM_001400053Re-query CCDS DB by Protein ID:NP_001386982Link to BLAST:NP_001386982.1
Original member Current member NCBI NM_005587.6 NP_005578.2 Accepted alive Link to Nucleotide Sequence:NM_005587.6Link to Protein Sequence:NP_005578.2Re-query CCDS DB by Nucleotide ID:NM_005587Re-query CCDS DB by Protein ID:NP_005578Link to BLAST:NP_005578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339546.1 499 Q02078-5 499 100% 0 0
NP_001352136.1 499 Q02078-5 499 100% 0 0
NP_001386967.1 499 Q02078-5 499 100% 0 0
NP_001386968.1 499 Q02078-5 499 100% 0 0
NP_001386969.1 499 Q02078-5 499 100% 0 0
NP_001386978.1 499 Q02078-5 499 100% 0 0
NP_001386979.1 499 Q02078-5 499 100% 0 0
NP_001386980.1 499 Q02078-5 499 100% 0 0
NP_001386981.1 499 Q02078-5 499 100% 0 0
NP_001386982.1 499 Q02078-5 499 100% 0 0
NP_005578.2 499 Q02078-5 499 100% 0 0

Chromosomal Locations for CCDS 45362.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99633120 99633173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99645561 99645764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99671520 99671657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99674393 99674612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99675399 99675458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99690241 99690428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99706729 99706855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99710634 99710760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99712390 99712771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGGGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTTTACAAAGA
GAAAGTTTGGATTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTGTGAAATAGCACTCATCAT
TTTCAACAGCTCTAACAAACTGTTTCAATATGCTAGCACTGATATGGACAAAGTTCTTCTCAAGTATACA
GAATATAATGAACCTCATGAAAGCAGAACCAACTCGGATATTGTTGAGGCTCTGAACAAGAAGGAACACA
GAGGGTGCGACAGCCCAGACCCTGATACTTCATATGTGCTAACTCCACATACAGAAGAAAAATATAAAAA
AATTAATGAGGAATTTGATAATATGATGCGGAATCATAAAATCGCACCTGGTCTGCCACCTCAGAACTTT
TCAATGTCTGTCACAGTTCCAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGG
TGTCCCCATCTTTGGCAGCCAGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATT
ACATAGAAATGTGTCTCCTGGAGCTCCTCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGC
ACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTCCAGTGGGGAATGGATTTGTAAACTCAAGAG
CTTCTCCAAATTTGATTGGAGCTACTGGTGCAAATAGCTTAGGCAAAGTCATGCCTACAAAGTCTCCCCC
TCCACCAGGTGGTGGTAATCTTGGAATGAACAGTAGGAAACCAGATCTTCGAGTTGTCATCCCCCCTTCA
AGCAAGGGCATGATGCCTCCACTAAATACCCAGAGGATCAGTAGTTCTCAAGCCACTCAACCTCTTGCTA
CCCCAGTCGTGTCTGTGACAACCCCAAGCTTGCCTCCGCAAGGACTTGTGTACTCAGCAATGCCGACTGC
CTACAACACTGATTATTCACTGACCAGCGCTGACCTGTCAGCCCTTCAAGGCTTCAACTCGCCAGGAATG
CTGTCGCTGGGACAGGTGTCGGCCTGGCAGCAGCACCACCTAGGACAAGCAGCCCTCAGCTCTCTTGTTG
CTGGAGGGCAGTTATCTCAGGGTTCCAATTTATCCATTAATACCAACCAAAACATCAGCATCAAGTCCGA
ACCGATTTCACCTCCTCGGGATCGTATGACCCCATCGGGCTTCCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCCGCCGCCACCACCGCAGCCCCAGCCACAACCCCCGCAGCCCCAGCCCCGACAGGAAATGGGGC
GCTCCCCTGTGGACAGTCTGAGCAGCTCTAGTAGCTCCTATGATGGCAGTGATCGGGAGGATCCACGGGG
CGACTTCCATTCTCCAATTGTGCTTGGCCGACCCCCAAACACTGAGGACAGAGAAAGCCCTTCTGTAAAG
CGAATGAGGATGGACGCGTGGGTGACCTAA

Translation (499 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNF
SMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLS
TTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPS
SKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGM
LSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQ
QQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVK
RMRMDAWVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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