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    Aknad1 AKNA domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 329738, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Aknad1provided by MGI
    Official Full Name
    AKNA domain containing 1provided by MGI
    Primary source
    MGI:MGI:3584453
    See related
    Ensembl:ENSMUSG00000049565 AllianceGenome:MGI:3584453
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4921525H12Rik
    Summary
    Orthologous to human AKNAD1 (AKNA domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 2.1), limb E14.5 (RPKM 0.6) and 3 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    3 F3; 3 47.64 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (108646876..108689625)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (108739559..108782309)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 47 Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene chloride channel CLIC-like 1 Neighboring gene G-protein signalling modulator 2 (AGS3-like, C. elegans) Neighboring gene STARR-positive B cell enhancer ABC_E4575 Neighboring gene syntaxin binding protein 3 Neighboring gene STARR-positive B cell enhancer mm9_chr3:108642483-108642783 Neighboring gene STARR-positive B cell enhancer mm9_chr3:108643371-108643672 Neighboring gene fibronectin type III domain containing 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Voltage-dependent conformational changes of Kv1.3 channels activate cell proliferation. Cidad P, et al. J Cell Physiol, 2021 Jun. PMID 33230847
    2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein AKNAD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177859.3 → NP_808527.2  protein AKNAD1

      See identical proteins and their annotated locations for NP_808527.2

      Status: VALIDATED

      Source sequence(s)
      AK135678, AK164420, AL671917
      Consensus CDS
      CCDS51049.1
      UniProtKB/TrEMBL
      E9Q8N6
      Related
      ENSMUSP00000121755.3, ENSMUST00000133931.9
      Conserved Domains (1) summary
      pfam12443
      Location:322 → 414
      AKNA; AT-hook-containing transcription factor

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      108646876..108689625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011240149.3 → XP_011238451.1  protein AKNAD1 isoform X1

      See identical proteins and their annotated locations for XP_011238451.1

      UniProtKB/TrEMBL
      E9Q8N6
      Conserved Domains (1) summary
      pfam12443
      Location:322 → 414
      AKNA; AT-hook-containing transcription factor

    2. XM_011240150.4 → XP_011238452.1  protein AKNAD1 isoform X2

      Conserved Domains (1) summary
      pfam12443
      Location:322 → 414
      AKNA; AT-hook-containing transcription factor

    3. XM_006501611.5 → XP_006501674.1  protein AKNAD1 isoform X3

      Conserved Domains (1) summary
      pfam12443
      Location:322 → 411
      AKNA; AT-hook-containing transcription factor

    4. XM_011240151.3 → XP_011238453.1  protein AKNAD1 isoform X4

      See identical proteins and their annotated locations for XP_011238453.1

      UniProtKB/TrEMBL
      Q8BI23
      Related
      ENSMUSP00000125068.2, ENSMUST00000123556.8
      Conserved Domains (1) summary
      pfam12443
      Location:322 → 409
      AKNA; AT-hook-containing transcription factor

    5. XM_006501608.5 → XP_006501671.1  protein AKNAD1 isoform X1

      See identical proteins and their annotated locations for XP_006501671.1

      UniProtKB/TrEMBL
      E9Q8N6
      Conserved Domains (1) summary
      pfam12443
      Location:322 → 414
      AKNA; AT-hook-containing transcription factor

    6. XM_006501609.4 → XP_006501672.1  protein AKNAD1 isoform X1

      See identical proteins and their annotated locations for XP_006501672.1

      UniProtKB/TrEMBL
      E9Q8N6
      Conserved Domains (1) summary
      pfam12443
      Location:322 → 414
      AKNA; AT-hook-containing transcription factor
    Nucleotide Protein Strain
    Heading Accession and Version

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