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    MRPS31P5 mitochondrial ribosomal protein S31 pseudogene 5 [ Homo sapiens (human) ]

    Gene ID: 100887750, updated on 10-Oct-2023

    Summary

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    Official Symbol
    MRPS31P5provided by HGNC
    Official Full Name
    mitochondrial ribosomal protein S31 pseudogene 5provided by HGNC
    Primary source
    HGNC:HGNC:39253
    See related
    Ensembl:ENSG00000291010 AllianceGenome:HGNC:39253
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MRPS31P3
    Expression
    Ubiquitous expression in bone marrow (RPKM 2.8), testis (RPKM 2.6) and 25 other tissues See more
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    Genomic context

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    Location:
    13q14.3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (52167709..52194467, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (51382534..51409292, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (52741844..52768602, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene NIMA related kinase 5 Neighboring gene uncharacterized LOC101929657 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:52706487-52707686 Neighboring gene uncharacterized LOC124903176 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5381 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5382 Neighboring gene Sharpr-MPRA regulatory region 2809 Neighboring gene NIMA related kinase 3 Neighboring gene thrombospondin type 1 domain containing 1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:52764223-52764724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7789 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:52796837-52797005 Neighboring gene TPTE2 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:52907715-52908216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:52908217-52908716 Neighboring gene long intergenic non-protein coding RNA 2333

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Transcriptome and Gene Fusion Analysis of Synchronous Lesions Reveals lncMRPS31P5 as a Novel Transcript Involved in Colorectal Cancer. Panza A, et al. Int J Mol Sci, 2020 Sep 27. PMID 32992457, Free PMC Article
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Transcriptome and Gene Fusion Analysis of Synchronous Lesions Reveals lncMRPS31P5 as a Novel Transcript Involved in Colorectal Cancer.
      Title: Transcriptome and Gene Fusion Analysis of Synchronous Lesions Reveals lncMRPS31P5 as a Novel Transcript Involved in Colorectal Cancer.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • mitochondrial ribosomal protein S31 pseudogene 3

    Clone Names

    • FLJ14630, FLJ97072, FLJ97293, FLJ99421, DKFZp434F1622, DKFZp686O21268

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002816.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AK027536, AL158066, BX648914
      Related
      ENST00000416599.5

    2. NR_051963.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses two alternate splice sites in the 5' region, compared to variant 1.
      Source sequence(s)
      AL139082, AL158066, BX648914, DA732370

    3. NR_051964.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate 5' exon and lacks two internal exons, compared to variant 1.
      Source sequence(s)
      AK307345, AL139082, BX648914, DA732370

    4. NR_051965.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate 5' exon, lacks an internal exon, and uses an alternate splice site in the 3' region, compared to variant 1.
      Source sequence(s)
      AK307124, AL139082, BX648914, DA732370

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      52167709..52194467 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      51382534..51409292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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