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    RNA5SP461 RNA, 5S ribosomal pseudogene 461 [ Homo sapiens (human) ]

    Gene ID: 100873705, updated on 10-Oct-2023

    Summary

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    Official Symbol
    RNA5SP461provided by HGNC
    Official Full Name
    RNA, 5S ribosomal pseudogene 461provided by HGNC
    Primary source
    HGNC:HGNC:43361
    See related
    Ensembl:ENSG00000252260 AllianceGenome:HGNC:43361
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RN5S461
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    Genomic context

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    Location:
    18q23
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (77863464..77863567, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (78095053..78095156, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (75575420..75575523, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C8 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9565 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75370231-75371192 Neighboring gene uncharacterized LOC107985129 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75465232-75465784 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75474392-75475106 Neighboring gene MPRA-validated peak3188 silencer Neighboring gene VISTA enhancer hs1020 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:75535169-75536368 Neighboring gene VISTA enhancer hs1186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75577351-75577852 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75609611-75610121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75611971-75612487 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75617943-75618714 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:75629975-75630209 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50500 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75682747-75683315 Neighboring gene long intergenic non-protein coding RNA 1029 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75714815-75715343 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75717895-75718640 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75718641-75719385 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75791151-75791652 Neighboring gene RNA, U6 small nuclear 655, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • RNA, 5S ribosomal 461

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_033682.1 

      Range
      101..204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      77863464..77863567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      78095053..78095156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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