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    LOC18437298 splicing factor, suppressor of white-apricot homolog [ Amborella trichopoda ]

    Gene ID: 18437298, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18437298
    Gene description
    splicing factor, suppressor of white-apricot homolog
    Locus tag
    AMTR_s00014p00221370
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18437298 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499364.1 (4498981..4528693)

    NW_006499364.1Genomic Context describing neighboring genes Neighboring gene receptor-like serine/threonine-protein kinase At1g78530 Neighboring gene uncharacterized LOC110007553 Neighboring gene UPF0505 protein Neighboring gene protein usf

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006499364.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor, suppressor of white-apricot homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006499364.1 Reference AMTR1.0 Primary Assembly

      Range
      4498981..4528693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006847511.3 → XP_006847574.3  splicing factor, suppressor of white-apricot homolog isoform X1

      UniProtKB/TrEMBL
      W1PPP1
      Conserved Domains (3) summary
      smart00648
      Location:177 → 227
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:29 → 137
      DRY_EERY; Alternative splicing regulator
      cl25887
      Location:899 → 956
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    2. XM_020669073.1 → XP_020524732.1  splicing factor, suppressor of white-apricot homolog isoform X2

      Conserved Domains (2) summary
      smart00648
      Location:55 → 105
      SWAP; Suppressor-of-White-APricot splicing regulator
      cl25887
      Location:766 → 851
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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