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    ttc3 tetratricopeptide repeat domain 3 [ Takifugu rubripes (torafugu) ]

    Gene ID: 105417445, updated on 13-Mar-2024

    Summary

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    Gene symbol
    ttc3
    Gene description
    tetratricopeptide repeat domain 3
    See related
    Ensembl:ENSTRUG00000006492
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Orthologs
    human zebrafish all
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    Genomic context

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    See ttc3 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 15 NC_042299.1 (6477352..6490863, complement)
    101 previous assembly FUGU5 (GCF_000180615.1) 15 NC_018904.1 (2913193..2925225, complement)

    Chromosome 15 - NC_042299.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 2 subunit beta 1 Neighboring gene VPS26 endosomal protein sorting factor C Neighboring gene uncharacterized LOC105417447 Neighboring gene G protein-activated inward rectifier potassium channel 2-like Neighboring gene uncharacterized LOC105417444 Neighboring gene potassium channel tetramerization domain containing 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TTC3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042299.1 Reference fTakRub1.2 Primary Assembly

      Range
      6477352..6490863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029848495.1 → XP_029704355.1  E3 ubiquitin-protein ligase TTC3 isoform X3

      Conserved Domains (5) summary
      PRK14907
      Location:343 → 451
      rplD; 50S ribosomal protein L4; Provisional
      PLN03088
      Location:196 → 283
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      COG1196
      Location:1294 → 1471
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00006
      Location:193 → 221
      TPR; TPR repeat [structural motif]
      cd16481
      Location:1633 → 1674
      RING-H2_TTC3; RING finger, H2 subclass, found in Tetratricopeptide repeat protein 3 (TTC3) and similar proteins

    2. XM_011611163.2 → XP_011609465.2  E3 ubiquitin-protein ligase TTC3 isoform X1

      Conserved Domains (5) summary
      PRK14907
      Location:416 → 524
      rplD; 50S ribosomal protein L4; Provisional
      PLN03088
      Location:269 → 356
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      COG1196
      Location:1367 → 1544
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00006
      Location:266 → 294
      TPR; TPR repeat [structural motif]
      cd16481
      Location:1706 → 1747
      RING-H2_TTC3; RING finger, H2 subclass, found in Tetratricopeptide repeat protein 3 (TTC3) and similar proteins

    3. XM_029848494.1 → XP_029704354.1  E3 ubiquitin-protein ligase TTC3 isoform X2

      UniProtKB/TrEMBL
      H2SU09
      Related
      ENSTRUP00000015896.3, ENSTRUT00000015966.3

    4. XM_029848496.1 → XP_029704356.1  E3 ubiquitin-protein ligase TTC3 isoform X4

    RNA

    1. XR_003890994.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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