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    LINC02271 long intergenic non-protein coding RNA 2271 [ Homo sapiens (human) ]

    Gene ID: 105377249, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC02271provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2271provided by HGNC
    Primary source
    HGNC:HGNC:53186
    See related
    Ensembl:ENSG00000240152 AllianceGenome:HGNC:53186
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02271 in Genome Data Viewer
    Location:
    4q13.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (61143656..61153651)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (64581587..64591582)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (62009374..62019369)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2 regulatory subunit B, gamma pseudogene Neighboring gene long intergenic non-protein coding RNA 2496 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:61702564-61703334 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:61799272-61800471 Neighboring gene microRNA 548ag-1 Neighboring gene Sharpr-MPRA regulatory region 1933 Neighboring gene uncharacterized LOC124900173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:62068190-62068762 Neighboring gene ribosomal protein L17 pseudogene 19 Neighboring gene adhesion G protein-coupled receptor L3 Neighboring gene Sharpr-MPRA regulatory region 909 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:62252700-62253638 Neighboring gene Sharpr-MPRA regulatory region 11493 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:62459979-62460480 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:62512092-62512706 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:62512707-62513321 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:62629970-62630560 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:62630561-62631150 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:62633919-62634780 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:62634781-62635644 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:62635645-62636506 Neighboring gene ribosomal protein S12 pseudogene 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_147148.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC096652
      Related
      ENST00000506379.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      61143656..61153651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      64581587..64591582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)