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    AFTPH-DT AFTPH divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101927402, updated on 10-Oct-2023

    Summary

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    Official Symbol
    AFTPH-DTprovided by HGNC
    Official Full Name
    AFTPH divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:52788
    See related
    Ensembl:ENSG00000260101 AllianceGenome:HGNC:52788
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See AFTPH-DT in Genome Data Viewer
    Location:
    2p14
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (64522189..64524155, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (64531627..64533593, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (64749323..64751289, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene LGALSL divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11554 Neighboring gene galectin like Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:64711199-64712398 Neighboring gene Sharpr-MPRA regulatory region 8770 Neighboring gene long intergenic non-protein coding RNA 1805 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15893 Neighboring gene H3K27ac hESC enhancers GRCh37_chr2:64751340-64751840 and GRCh37_chr2:64751841-64752341 Neighboring gene uncharacterized LOC105374773 Neighboring gene microRNA 4434 Neighboring gene aftiphilin Neighboring gene RNA, U6 small nuclear 100, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136167.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008074, BC035180
      Related
      ENST00000561559.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      64522189..64524155 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      64531627..64533593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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