Structure, expression and chromosomal localization of human p80-coilin gene

Nucleic Acids Res. 1994 Oct 25;22(21):4462-9. doi: 10.1093/nar/22.21.4462.

Abstract

Coiled bodies (CBs) are non-capsular nuclear bodies with a diameter of 0.3-1 micron and appear to be composed of coiled fibrils. Human autoantibodies to CBs recognize an 80-kD nuclear protein highly enriched in CBs, and this protein has been named p80-coilin. CBs are known to assemble and disassemble during the cell cycle, with the highest number of CBs occurring at mid to late G1 where p80-coilin is assembled into several small nuclear body-like structures. In S and G2 phases, CBs become larger and their number decreases and often they are undetectable during mitosis. Using a human autoantibody as a probe for expression cloning, we initially isolated a partial cDNA encoding p80-coilin. In this report, the 5' end of the complete cDNA for p80-coilin was obtained using the 5'-RACE (rapid amplification of cDNA ends) methodology. The size of the reconstructed full-length cDNA corresponds to the 2.7-kb mRNA detected in Northern blot analysis. The complete p80-coilin protein consists of 576 amino acids with a predicted molecular mass of 62,608. A putative p80-coilin pseudogene was also detected during the rescreening of p80-coilin cDNA. To confirm the validity of the cDNA sequence, three overlapping genomic DNA clones representing the human p80-coilin gene were selected for further analysis. The complete gene for p80-coilin contains 7 exons spanning approximately 25kb. Sequence analysis of exons 1 and 2 in genomic DNA clones confirmed the accuracy of the 5' cDNA sequence derived from the 5'-RACE procedure. Furthermore, the human p80-coilin gene was localized to chromosome 17q22-23 by fluorescence in situ hybridization.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Autoantibodies
  • Base Sequence
  • Blotting, Northern
  • Chromosome Mapping*
  • Chromosomes, Human, Pair 17
  • DNA, Complementary / chemistry
  • Humans
  • Immunosorbent Techniques
  • In Situ Hybridization, Fluorescence
  • Molecular Sequence Data
  • Molecular Weight
  • Nuclear Proteins / chemistry
  • Nuclear Proteins / genetics*
  • RNA, Messenger / chemistry
  • Recombinant Proteins
  • Sequence Analysis

Substances

  • Autoantibodies
  • DNA, Complementary
  • Nuclear Proteins
  • RNA, Messenger
  • Recombinant Proteins
  • p80-coilin

Associated data

  • GENBANK/L06522
  • GENBANK/U06632