Expression and sub-cellular localization of human ABH family molecules

J Cell Mol Med. 2007 Sep-Oct;11(5):1105-16. doi: 10.1111/j.1582-4934.2007.00094.x.

Abstract

AlkB is an Escherichia coli protein that catalyses the oxidative demethylation of 1-methyladenine and 3-methylcytosine in DNA and RNA. The enzyme activity of AlkB is dependent on a 2-oxoglutarate- and Fe(II)-dependent (2OG-Fe[II]) oxygenase domain. Human AlkB homologues (hABH), hABH1, hABH2 and hABH3, which also possess the 2OG-Fe(II) oxygenase domain, have previously been identified. Recent bioinformatics analysis suggests the existence of an additional five ABH genes in humans. In this study, we identified the hABH4-hABH7 mRNAs and determined their expression in human tissues. Moreover, an hABH2 splice variant lacking the 2OG-Fe(II) oxygenase domain and a new gene, hABH8, were cloned from testis cDNA. hABH8 possesses not only the 2OG-Fe(II) oxygenase domain but both an RNA-binding motif and a methyl-transferase domain. mRNA of the eight hABH molecules was detected in the 16 normal human tissues examined. The sub-cellular localization of EmGFP-hABH8 was restricted to the cytoplasm. EmGFP-hABH1, 3, 4, 6 and 7 were localized in both the cytoplasm and nuclei. Interestingly, the EmGFP-hABH2 splice variant localized in nucleoplasm with a dot-like pattern. In some HeLa cells transfected with EmGFP-hABH5, dot-like fluorescence was also detected in the cytoplasm. These observations provide important information for the future annotation of the hABH family of molecules.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Cloning, Molecular
  • DNA Repair Enzymes / chemistry
  • DNA Repair Enzymes / genetics*
  • DNA Repair Enzymes / metabolism*
  • DNA, Complementary / genetics
  • Gene Expression Profiling*
  • Gene Expression Regulation, Enzymologic*
  • Green Fluorescent Proteins / metabolism
  • HeLa Cells
  • Humans
  • Immunoblotting
  • Male
  • Molecular Sequence Data
  • Protein Transport
  • Recombinant Fusion Proteins / metabolism
  • Reverse Transcriptase Polymerase Chain Reaction
  • Subcellular Fractions / enzymology
  • Testis / enzymology

Substances

  • DNA, Complementary
  • Recombinant Fusion Proteins
  • Green Fluorescent Proteins
  • DNA Repair Enzymes

Associated data

  • GENBANK/AB218768
  • GENBANK/AB277859