Molecular cloning of hSLP-1, a novel human brain-specific member of the band 7/MEC-2 family similar to Caenorhabditis elegans UNC-24

Gene. 1998 Dec 28;225(1-2):23-9. doi: 10.1016/s0378-1119(98)00532-0.

Abstract

We have isolated and characterized cDNA clones encoding a stomatin-like protein (hSLP-1) from a human cerebral cortex cDNA library. The deduced amino acid sequence (394 residues) revealed that hSLP-1 is a bipartite protein, containing a major stomatin-like part, starting at the N-terminus, and a non-specific lipid transfer protein (nsLTP)-domain at the C-terminal end, similar to the Caenorhabditis elegans protein UNC-24. Therefore, we conclude that hSLP-1 is the human homologue of UNC-24. In addition, the identification of an alternatively spliced variant demonstrated that two exon/intron boundaries are conserved in the hSLP-1 and unc-24 genes. Northern blot and RNA dot blot analyses showed that the 2. 2-kb transcript is mainly expressed in the brain, with the highest levels in the frontal lobe, cerebral cortex, caudate nucleus, amygdala, temporal lobe, putamen, substantia nigra, and hippocampus. This high-level expression of hSLP-1 in the basal ganglia may also reflect the evolutionary link to UNC-24.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Blood Proteins / genetics*
  • Blotting, Northern
  • Brain / metabolism*
  • Caenorhabditis elegans / genetics*
  • Caenorhabditis elegans Proteins*
  • Cloning, Molecular
  • DNA, Complementary / chemistry
  • DNA, Complementary / genetics
  • DNA, Complementary / isolation & purification
  • Gene Expression
  • Helminth Proteins / genetics*
  • Humans
  • Immunoblotting
  • Membrane Proteins / genetics*
  • Molecular Sequence Data
  • Nerve Tissue Proteins
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Tissue Distribution

Substances

  • Blood Proteins
  • Caenorhabditis elegans Proteins
  • DNA, Complementary
  • Helminth Proteins
  • Membrane Proteins
  • Nerve Tissue Proteins
  • RNA, Messenger
  • STOM protein, human
  • STOML1 protein, human
  • Unc-24 protein, C elegans

Associated data

  • GENBANK/Y16522