Interaction of Escherichia coli DNA polymerase I (Klenow fragment) with primer-templates containing N-acetyl-2-aminofluorene or N-2-aminofluorene adducts in the active site

J Biol Chem. 1999 Feb 5;274(6):3279-84. doi: 10.1074/jbc.274.6.3279.

Abstract

DNA adducts formed by aromatic amines such as N-acetyl-2-aminofluorene (AAF) and N-2-aminofluorene (AF) are known to cause mutations by interfering with the process of DNA replication. To understand this phenomenon better, a gel retardation assay was used to measure the equilibrium dissociation constants for the binding of an exonuclease-deficient Escherichia coli DNA polymerase I (Klenow fragment) to DNA primer-templates modified with an AAF or AF adduct. The results indicate that the nature of the adduct as well as the presence and nature of an added dNTP have a significant influence on the strength of the binding of the polymerase to the DNA. More specifically, it was found that the binding is 5-10-fold stronger when an AAF adduct, but not an AF adduct, is positioned in the enzyme active site. In addition, the polymerase was found to bind the unmodified primer-template less strongly in the presence of a noncomplementary dNTP than in the presence of the correct nucleotide. The same trend holds true for the primer-template having an AF adduct, although the magnitude of this difference was lower. In the case of the AAF adduct, the interaction of the polymerase with the primer-template was stronger and almost independent of the nucleotide present.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 2-Acetylaminofluorene / toxicity*
  • Base Sequence
  • Binding Sites
  • Carcinogens / toxicity
  • DNA Adducts / metabolism*
  • DNA Polymerase I / metabolism*
  • DNA Primers
  • Escherichia coli / enzymology*
  • Fluorenes / metabolism*
  • Protein Binding
  • Templates, Genetic

Substances

  • 2-aminofluorene-DNA complex
  • Carcinogens
  • DNA Adducts
  • DNA Primers
  • Fluorenes
  • 2-Acetylaminofluorene
  • DNA Polymerase I