Mammalian base excision repair by DNA polymerases delta and epsilon

Oncogene. 1998 Aug 20;17(7):835-43. doi: 10.1038/sj.onc.1202001.

Abstract

Two distinct pathways for completion of base excision repair (BER) have been discovered in eukaryotes: the DNA polymerase beta (Pol beta)-dependent short-patch pathway that involves the replacement of a single nucleotide and the long-patch pathway that entails the resynthesis of 2-6 nucleotides and requires PCNA. We have used cell extracts from Pol beta-deleted mouse fibroblasts to separate subfractions containing either Pol delta or Pol epsilon. These fractions were then tested for their ability to perform both short- and long-patch BER in an in vitro repair assay, using a circular DNA template, containing a single abasic site at a defined position. Remarkably, both Pol delta and Pol epsilon were able to replace a single nucleotide at the lesion site, but the repair reaction is delayed compared to single nucleotide replacement by Pol beta. Furthermore, our observations indicated, that either Pol delta and/or Pol epsilon participate in the long-patch BER. PCNA and RF-C, but not RP-A are required for this process. Our data show for the first time that Pol delta and/or Pol epsilon are directly involved in the long-patch BER of abasic sites and might function as back-up system for Pol beta in one-gap filling reactions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cells, Cultured
  • DNA Polymerase II / metabolism*
  • DNA Polymerase III / metabolism*
  • DNA Polymerase beta / deficiency
  • DNA Polymerase beta / genetics
  • DNA Repair*
  • Fibroblasts
  • Gene Deletion
  • Kinetics
  • Mammals
  • Mice
  • Proliferating Cell Nuclear Antigen / metabolism*
  • Substrate Specificity

Substances

  • Proliferating Cell Nuclear Antigen
  • DNA Polymerase II
  • DNA Polymerase III
  • DNA Polymerase beta