Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III

Cell. 1997 Oct 31;91(3):335-45. doi: 10.1016/s0092-8674(00)80417-1.

Abstract

The crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III has been determined. Three consecutive domains in the structure are arranged in a C-shaped architecture. The N-terminal domain contains a nonfunctional nucleotide binding site. The catalytic component of the clamp-loader complex is the gamma subunit, which is homologous to delta'. A sequence-structure alignment suggests that nucleotides bind to gamma at an interdomain interface within the inner surface of the "C." The alignment is extended to other clamp-loader complexes and to the RuvB family of DNA helicases, and suggests that each of these is assembled from C-shaped components that can open and close the jaws of the "C" in response to ATP binding and hydrolysis.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Amino Acid Sequence
  • Crystallography, X-Ray
  • DNA Polymerase III / chemistry*
  • DNA Polymerase III / metabolism
  • Escherichia coli / enzymology*
  • Hydrolysis
  • Models, Molecular
  • Molecular Sequence Data
  • Phosphates / metabolism
  • Protein Conformation
  • Sequence Homology, Amino Acid

Substances

  • Phosphates
  • Adenosine Triphosphate
  • DNA Polymerase III