The amino acid sequence required for 5' --> 3' exonuclease activity of Bacillus caldotenax DNA polymerase

Protein Eng. 1995 Nov;8(11):1171-5. doi: 10.1093/protein/8.11.1171.

Abstract

We studied the 5' --> 3' exonuclease activity of Bacillus caldotenax DNA polymerase by site-directed mutagenesis. Among seven mutants constructed, two mutant DNA polymerases with an amino acid substitution of Gly184 --> Asp or Gly192 --> Asp were confirmed to be deficient in this exonuclease. The two positions corresponded to those of the Escherichia coli DNA polymerase I mutants defective in 5' --> 3' exonuclease, polA480ex and polA214. These results provide experimental support for the proposed amino acid sequence essential for the 5' --> 3' exonuclease activity associated with eubacterial polymerase I-like DNA polymerases (family A), including E.coli and Thermus aquaticus.

Publication types

  • Comparative Study

MeSH terms

  • Bacillus / enzymology*
  • Bacillus / genetics
  • Base Sequence
  • DNA Polymerase I / genetics
  • DNA Polymerase I / metabolism*
  • Escherichia coli / genetics
  • Exodeoxyribonuclease V
  • Exodeoxyribonucleases / genetics
  • Exodeoxyribonucleases / metabolism*
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Recombinant Proteins / metabolism
  • Structure-Activity Relationship

Substances

  • Recombinant Proteins
  • DNA Polymerase I
  • Exodeoxyribonucleases
  • Exodeoxyribonuclease V