NF-E2 disrupts chromatin structure at human beta-globin locus control region hypersensitive site 2 in vitro

Mol Cell Biol. 1996 Oct;16(10):5634-44. doi: 10.1128/MCB.16.10.5634.

Abstract

The human beta-globin locus control region (LCR) is responsible for forming an active chromatin structure extending over the 100-kb locus, allowing expression of the beta-globin gene family. The LCR consists of four erythroid-cell-specific DNase I hypersensitive sites (HS1 to -4). DNase I hypersensitive sites are thought to represent nucleosome-free regions of DNA which are bound by trans-acting factors. Of the four hypersensitive sites only HS2 acts as a transcriptional enhancer. In this study, we examine the binding of an erythroid protein to its site within HS2 in chromatin in vitro. NF-E2 is a transcriptional activator consisting of two subunits, the hematopoietic cell-specific p45 and the ubiquitous DNA-binding subunit, p18. NF-E2 binds two tandem AP1-like sites in HS2 which form the core of its enhancer activity. In this study, we show that when bound to in vitro-reconstituted chromatin, NF-E2 forms a DNase I hypersensitive site at HS2 similar to the site observed in vivo. Moreover, NF-E2 binding in vitro results in a disruption of nucleosome structure which can be detected 200 bp away. Although NF-E2 can disrupt nucleosomes when added to preformed chromatin, the disruption is more pronounced when NF-E2 is added to DNA prior to chromatin assembly. Interestingly, the hematopoietic cell-specific subunit, p45, is necessary for binding to chromatin but not to naked DNA. Interaction of NF-E2 with its site in chromatin-reconstituted HS2 allows a second erythroid factor, GATA-1, to bind its nearby sites. Lastly, nucleosome disruption by NF-E2 is an ATP-dependent process, suggesting the involvement of energy-dependent nucleosome remodeling factors.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Animals
  • Binding Sites
  • Cell Line
  • Chromatin / physiology*
  • Chromatin / ultrastructure
  • DNA-Binding Proteins / metabolism*
  • Deoxyribonuclease I
  • Drosophila
  • Erythroid-Specific DNA-Binding Factors
  • GATA1 Transcription Factor
  • Globins / biosynthesis
  • Globins / genetics*
  • Humans
  • Leukemia, Erythroblastic, Acute
  • Macromolecular Substances
  • MafK Transcription Factor
  • Mice
  • NF-E2 Transcription Factor
  • NF-E2 Transcription Factor, p45 Subunit
  • Nuclear Proteins / metabolism
  • Nucleosomes / physiology
  • Nucleosomes / ultrastructure
  • Oligonucleotide Probes
  • Polymerase Chain Reaction
  • Recombinant Proteins / biosynthesis
  • Trans-Activators / metabolism
  • Transcription Factors / metabolism*
  • Transcription, Genetic
  • Tumor Cells, Cultured

Substances

  • Chromatin
  • DNA-Binding Proteins
  • Erythroid-Specific DNA-Binding Factors
  • GATA1 Transcription Factor
  • GATA1 protein, human
  • Gata1 protein, mouse
  • MAFK protein, human
  • Macromolecular Substances
  • MafK Transcription Factor
  • Mafk protein, mouse
  • NF-E2 Transcription Factor
  • NF-E2 Transcription Factor, p45 Subunit
  • NFE2 protein, human
  • Nfe2 protein, mouse
  • Nuclear Proteins
  • Nucleosomes
  • Oligonucleotide Probes
  • Recombinant Proteins
  • Trans-Activators
  • Transcription Factors
  • Adenosine Triphosphate
  • Globins
  • Deoxyribonuclease I