Characterization of a new allele of the human ERBB2 gene by allele-specific competition hybridization

Genomics. 1993 Feb;15(2):426-9. doi: 10.1006/geno.1993.1081.

Abstract

Nucleotide sequence analysis of the ERBB2 proton-oncogene in human breast tumors revealed a sequence variation at codons 654 and 655, corresponding to the transmembrane region of the protein. To investigate this polymorphism, genotyping of 340 unrelated individuals was conducted by allele-specific oligonucleotide (ASO) hybridization of DNA amplified from the ERBB2 transmembrane region. ASO hybridization under competition conditions allowed rapid and unambiguous assignment of alleles and revealed the occurrence of a new allele, B3, encoding Val-Val. The sensitivity and the specificity of the ASO competition hybridization technique indicate that the method is generally applicable to the analysis of polymorphisms in the human genome.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alleles*
  • Amino Acid Sequence
  • Base Sequence
  • Breast Neoplasms / genetics
  • DNA, Neoplasm
  • Genetic Predisposition to Disease
  • Humans
  • Lymphoproliferative Disorders / genetics
  • Molecular Sequence Data
  • Nucleic Acid Hybridization / methods*
  • Proto-Oncogene Proteins / genetics*
  • Proto-Oncogenes*
  • Receptor, ErbB-2

Substances

  • DNA, Neoplasm
  • Proto-Oncogene Proteins
  • Receptor, ErbB-2